View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5995_low_15 (Length: 239)

Name: NF5995_low_15
Description: NF5995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5995_low_15
NF5995_low_15
[»] scaffold0458 (2 HSPs)
scaffold0458 (18-223)||(4316-4517)
scaffold0458 (18-223)||(13634-13835)
[»] chr1 (3 HSPs)
chr1 (18-223)||(39449104-39449305)
chr1 (18-223)||(39459214-39459415)
chr1 (18-223)||(39469976-39470177)


Alignment Details
Target: scaffold0458 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 4316 - 4517
Alignment:
Q  18 gatgtattccctgggatttaattaattaattaatttgtttacatctttttaaggaataatatacgacttaccttatagccatgaaatataaaattatagc 117  Q
    ||||||||||||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4316 gatgtattccctgggatttaattaattcatt----tgtttacatctttttaaggaataatatacgacttaccttatagccatgaaatataaaattatagc 4411  T
Q  118 atgttaacggcagggtggggttggttcccagcaatcactagacacaaaaatacaaaacgaaagattttctacgagacgacatcaacgtgggtgcaatgta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4412 atgttaacggcagggtggggttggttcccagcaatcactagacacaaaaatacaaaacgaaagattttctacgagacgacatcaacgtgggtgcaatgta 4511  T
Q  218 tatttt 223  Q
    ||||||    
T  4512 tatttt 4517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 13634 - 13835
Alignment:
Q  18 gatgtattccctgggatttaattaattaattaatttgtttacatctttttaaggaataatatacgacttaccttatagccatgaaatataaaattatagc 117  Q
    ||||||||||||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13634 gatgtattccctgggatttaattaattcatt----tgtttacatctttttaaggaataatatacgacttaccttatagccatgaaatataaaattatagc 13729  T
Q  118 atgttaacggcagggtggggttggttcccagcaatcactagacacaaaaatacaaaacgaaagattttctacgagacgacatcaacgtgggtgcaatgta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13730 atgttaacggcagggtggggttggttcccagcaatcactagacacaaaaatacaaaacgaaagattttctacgagacgacatcaacgtgggtgcaatgta 13829  T
Q  218 tatttt 223  Q
    ||||||    
T  13830 tatttt 13835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 39449305 - 39449104
Alignment:
Q  18 gatgtattccctgggatttaattaattaattaatttgtttacatctttttaaggaataatatacgacttaccttatagccatgaaatataaaattatagc 117  Q
    ||||||||||||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39449305 gatgtattccctgggatttaattaattcatt----tgtttacatctttttaaggaataatatacgacttaccttatagccatgaaatataaaattatagc 39449210  T
Q  118 atgttaacggcagggtggggttggttcccagcaatcactagacacaaaaatacaaaacgaaagattttctacgagacgacatcaacgtgggtgcaatgta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39449209 atgttaacggcagggtggggttggttcccagcaatcactagacacaaaaatacaaaacgaaagattttctacgagacgacatcaacgtgggtgcaatgta 39449110  T
Q  218 tatttt 223  Q
    ||||||    
T  39449109 tatttt 39449104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 39459415 - 39459214
Alignment:
Q  18 gatgtattccctgggatttaattaattaattaatttgtttacatctttttaaggaataatatacgacttaccttatagccatgaaatataaaattatagc 117  Q
    ||||||||||||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39459415 gatgtattccctgggatttaattaattcatt----tgtttacatctttttaaggaataatatacgacttaccttatagccatgaaatataaaattatagc 39459320  T
Q  118 atgttaacggcagggtggggttggttcccagcaatcactagacacaaaaatacaaaacgaaagattttctacgagacgacatcaacgtgggtgcaatgta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39459319 atgttaacggcagggtggggttggttcccagcaatcactagacacaaaaatacaaaacgaaagattttctacgagacgacatcaacgtgggtgcaatgta 39459220  T
Q  218 tatttt 223  Q
    ||||||    
T  39459219 tatttt 39459214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 39470177 - 39469976
Alignment:
Q  18 gatgtattccctgggatttaattaattaattaatttgtttacatctttttaaggaataatatacgacttaccttatagccatgaaatataaaattatagc 117  Q
    ||||||||||||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39470177 gatgtattccctgggatttaattaattcatt----tgtttacatctttttaaggaataatatacgacttaccttatagccatgaaatataaaattatagc 39470082  T
Q  118 atgttaacggcagggtggggttggttcccagcaatcactagacacaaaaatacaaaacgaaagattttctacgagacgacatcaacgtgggtgcaatgta 217  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39470081 atgttaacggcagggaggggttggttcccagcaatcactagacacaaaaatacaaaacgaaagattttctacgagacgacatcaacgtgggtgcaatgta 39469982  T
Q  218 tatttt 223  Q
    ||||||    
T  39469981 tatttt 39469976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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