View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5995_low_2 (Length: 533)
Name: NF5995_low_2
Description: NF5995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5995_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Complemental strand, 30025263 - 30024758
Alignment:
| Q |
18 |
caaccttccatccaacaatgcctacacaatccaacttccaccgctttggtcaggtcgcatatgggcccgcgacaactgctccttcgacgctacaggccac |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30025263 |
caaccttccatctaacaatgcctacacactccaacttccaccgctttggtcaggtcgcatatgggcccgcgacaactgctccttcgacgctacaggccac |
30025164 |
T |
|
| Q |
118 |
ggtcactgcaccactggagactgcggtggtatactctcatgtaacggccttggtggcacgccaccggcaacactagccgaattcactctcggcaacgacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30025163 |
ggtcactgcaccactggagactgcggtggtatactctcatgtaacggccttggtggcacgccaccggcaacactagccgaattcactctcggcaacgacc |
30025064 |
T |
|
| Q |
218 |
aagatttctacgacgttagtcttgtggacggttacaatcttccattaaccataacgccattaaatggtaacggaaaatgtgaattcgccggttgtgttag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30025063 |
aagatttctacgacgttagtcttgtggacggttacaatcttccgttaaccataacgccattaaatggtaacggaaaatgtgaattcgccggttgtgttag |
30024964 |
T |
|
| Q |
318 |
ggatcttaacgtcatgtgtcccatgagccttcaagttaggtcaagtgacatgaatcaagtggtgggttgtaagagtgcttgttatgcttttaactcacct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30024963 |
ggatcttaacgtcatgtgtcccatgagccttcaagttaggtcaagtgacatgaatcaagtggtgggctgtaagagtgcttgttatgcttttaactcacct |
30024864 |
T |
|
| Q |
418 |
aagtattgttgcacgggtagttatggaagcccacaggcttgtaagcccactagttattcgagaatctttaagttggcttgccctaaggcttactcttatg |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30024863 |
gagtattgttgcacgggtagttatggaagcccacaggcttgtaagcccactagttattcgagaatctttaagttggcttgccctaaggcttactcttatg |
30024764 |
T |
|
| Q |
518 |
cctttg |
523 |
Q |
| |
|
|||||| |
|
|
| T |
30024763 |
cctttg |
30024758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 518
Target Start/End: Complemental strand, 45273361 - 45273198
Alignment:
| Q |
355 |
aggtcaagtgacatgaatcaagtggtgggttgtaagagtgcttgttatgcttttaactcacctaagtattgttgcacgggtagttatggaagcccacagg |
454 |
Q |
| |
|
|||||| |||||| ||| || ||||||||||||| ||||||||| |||||| ||||| |||| |||||| || || |||| | ||| | ||||||| |
|
|
| T |
45273361 |
aggtcacgtgacaagaagcacgtggtgggttgtagaagtgcttgtgctgctttcaactctcctaggtattgctgtactggtaactttggtaccccacaga |
45273262 |
T |
|
| Q |
455 |
cttgtaagcccactagttattcgagaatctttaagttggcttgccctaaggcttactcttatgc |
518 |
Q |
| |
|
| || ||||||||| |||||| |||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
45273261 |
cctgcaagcccactgcttattcaagaatcttcaaaactgcttgcccaaaggcttactcttatgc |
45273198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 27975688 - 27975645
Alignment:
| Q |
217 |
caagatttctacgacgttagtcttgtggacggttacaatcttcc |
260 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
27975688 |
caagatttctacgacgtgagtctcgtcgacggttacaatcttcc |
27975645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University