View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5995_low_4 (Length: 454)

Name: NF5995_low_4
Description: NF5995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5995_low_4
NF5995_low_4
[»] chr5 (5 HSPs)
chr5 (1-438)||(41886728-41887165)
chr5 (49-136)||(41888933-41889019)
chr5 (325-384)||(28695710-28695769)
chr5 (324-384)||(28673460-28673520)
chr5 (185-242)||(41900799-41900856)
[»] chr4 (8 HSPs)
chr4 (272-392)||(7308311-7308431)
chr4 (297-387)||(8186543-8186633)
chr4 (297-376)||(7225346-7225425)
chr4 (303-375)||(532608-532680)
chr4 (323-372)||(1518820-1518869)
chr4 (324-392)||(1481563-1481631)
chr4 (189-233)||(1601177-1601221)
chr4 (198-238)||(53761152-53761192)
[»] chr7 (1 HSPs)
chr7 (83-158)||(10615252-10615326)
[»] chr6 (1 HSPs)
chr6 (297-392)||(9411909-9412004)
[»] chr8 (2 HSPs)
chr8 (297-375)||(18314833-18314911)
chr8 (187-241)||(18314967-18315021)
[»] chr3 (1 HSPs)
chr3 (187-233)||(51763737-51763783)


Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 41887165 - 41886728
Alignment:
Q  1 aagtaactattgcctctgcaatttcagaaggtaagcctcgtcaggaggaccttccattgcaaaagatgaaagcaactcatccgagatattcaaaaaccac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41887165 aagtaactattgcctctgcaatttcagaaggtaagcctcgtcaggaggaccttccattgcaaaagatgaaagcaactcatccgagatattcaaaaaccac 41887066  T
Q  101 aaatcaagacaagtcaagtcctttcaaacttaccaagctgtcaataaaatgtgaagtaatatgtgttagatttctagtgtgaggattggaaatggataaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41887065 aaatcaagacaagtcaagtcctttcaaacttaccaagctgtcaataaaatgtgaagtaatatgtgttagatttctagtgtaaggattggaaatggataaa 41886966  T
Q  201 gacttcaatgttggtctttcgcggagagcagaaacaataccaacctccgttatgcgataacagtcacgcaagatgacctcttccagaaactctcttttct 300  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886965 gacttcaatgttggtctttcccggagagcagaaacaataccaacctccgttatgcgataacagtcacgcaagatgacctcttccagaaactctcttttct 41886866  T
Q  301 taaacaagtcgaaaagcaatctatcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaagtgccagtgaaagaggctctgcctcatc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886865 taaacaagtcgaaaagcaatctatcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaagtgccagtgaaagaggctctgcctcatc 41886766  T
Q  401 atagcgtacacattgtatcgggtcactgaggtcgaggt 438  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41886765 atagcgtacacattgtatcgggtcactgaggtcgaggt 41886728  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 136
Target Start/End: Complemental strand, 41889019 - 41888933
Alignment:
Q  49 accttccattgcaaaagatgaaagcaactcatccgagatattcaaaaaccacaaatcaagacaagtcaagtcctttcaaacttaccaa 136  Q
    ||||| |||||||| ||| ||||||| |||||| |||||||||||| |  ||||||||||||||||||||| | |||||||| |||||    
T  41889019 accttgcattgcaatagaggaaagcatctcatcggagatattcaaagaaaacaaatcaagacaagtcaagtac-ttcaaactcaccaa 41888933  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 384
Target Start/End: Complemental strand, 28695769 - 28695710
Alignment:
Q  325 cgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaagtgccagtgaaa 384  Q
    |||||||||||||||||| ||||||||||||||| |  ||||||||||||| || |||||    
T  28695769 cgttgatgtagtgatgacgagagagattaaccttgcagagtttgaaaagtggcaatgaaa 28695710  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 384
Target Start/End: Complemental strand, 28673520 - 28673460
Alignment:
Q  324 tcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaagtgccagtgaaa 384  Q
    ||||||||||||||||||  ||||||||||||||| |  ||||||||||||| || |||||    
T  28673520 tcgttgatgtagtgatgatgagagagattaaccttgcagagtttgaaaagtggcaatgaaa 28673460  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 41900856 - 41900799
Alignment:
Q  185 attggaaatggataaagacttcaatgttggtctttcgcggagagcagaaacaatacca 242  Q
    ||||||||  ||||||||| ||||||||||||| | ||||||||||||| ||| ||||    
T  41900856 attggaaaatgataaagacctcaatgttggtctctggcggagagcagaagcaagacca 41900799  T

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Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 272 - 392
Target Start/End: Original strand, 7308311 - 7308431
Alignment:
Q  272 gatgacctcttccagaaactctcttttcttaaacaagtcgaaaagcaatctatcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaa 371  Q
    |||| |||||||||||| ||  |  ||||||||||||| ||||||||| |||| |||||||||  |||||| ||||||||| ||||| || |||||||||    
T  7308311 gatggcctcttccagaagcttacaattcttaaacaagtggaaaagcaacctattgttgatgtaccgatgacgagagagatttaccttgcggagtttgaaa 7308410  T
Q  372 agtgccagtgaaagaggctct 392  Q
    ||| || ||||||||| ||||    
T  7308411 agttcccgtgaaagagcctct 7308431  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 387
Target Start/End: Complemental strand, 8186633 - 8186543
Alignment:
Q  297 ttcttaaacaagtcgaaaagcaatctatcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaagtgccagtgaaagag 387  Q
    ||||| |||||||  ||||||||| | |||||||| |||| |||| |||| ||||||||||| || |||||||||||||||| ||||||||    
T  8186633 ttctttaacaagtgaaaaagcaatttgtcgttgatatagttatgattagatagattaaccttgcgaagtttgaaaagtgccaatgaaagag 8186543  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 376
Target Start/End: Complemental strand, 7225425 - 7225346
Alignment:
Q  297 ttcttaaacaagtcgaaaagcaatctatcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaagtgc 376  Q
    ||||||||||| | ||||||||||  ||| |||||||| | ||||| ||||||||||||| | || ||||||||||||||    
T  7225425 ttcttaaacaaatggaaaagcaattcatcattgatgtattcatgaccagagagattaaccctacggagtttgaaaagtgc 7225346  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 375
Target Start/End: Original strand, 532608 - 532680
Alignment:
Q  303 aacaagtcgaaaagcaatctatcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaagtg 375  Q
    ||||||| ||||||| ||   ||||||||||||| |||| |||| ||||||||||| || |||||||||||||    
T  532608 aacaagtggaaaagcgattggtcgttgatgtagtcatgagtagaaagattaaccttgcggagtttgaaaagtg 532680  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 372
Target Start/End: Complemental strand, 1518869 - 1518820
Alignment:
Q  323 atcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaa 372  Q
    ||||||||| ||||||||||||| |||||||| ||| || ||||||||||    
T  1518869 atcgttgatatagtgatgactagtgagattaaacttccggagtttgaaaa 1518820  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 392
Target Start/End: Original strand, 1481563 - 1481631
Alignment:
Q  324 tcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaagtgccagtgaaagaggctct 392  Q
    ||||||| ||||| ||||  ||||||||||| ||| || |||||||| ||||||| |||||||| ||||    
T  1481563 tcgttgacgtagtaatgatcagagagattaagcttgcggagtttgaagagtgccaatgaaagagcctct 1481631  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 1601177 - 1601221
Alignment:
Q  189 gaaatggataaagacttcaatgttggtctttcgcggagagcagaa 233  Q
    |||| |||||||||| ||||||||||||| || ||||||||||||    
T  1601177 gaaaaggataaagacctcaatgttggtctctcacggagagcagaa 1601221  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 53761192 - 53761152
Alignment:
Q  198 aaagacttcaatgttggtctttcgcggagagcagaaacaat 238  Q
    |||||| |||||||||||||||| |||||||||||| ||||    
T  53761192 aaagacgtcaatgttggtctttcacggagagcagaagcaat 53761152  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 10615252 - 10615326
Alignment:
Q  83 gagatattcaaaaaccacaaatcaagacaagtcaagtcctttcaaacttaccaagctgtcaataaaatgtgaagta 158  Q
    |||||||||| ||||  ||||||||||||||||||| || |||||||| |||||   |||||||||||||||||||    
T  10615252 gagatattcataaactgcaaatcaagacaagtcaag-cccttcaaactcaccaatgagtcaataaaatgtgaagta 10615326  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 392
Target Start/End: Original strand, 9411909 - 9412004
Alignment:
Q  297 ttcttaaacaagtcgaaaagcaatctatcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaagtgccagtgaaagaggctct 392  Q
    ||||||||||||| ||| ||  || | ||||||||||||||||||| ||||||||||| |||    ||||||||||||| || |||||||| ||||    
T  9411909 ttcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttgaaaagtgtcaatgaaagagtctct 9412004  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 375
Target Start/End: Complemental strand, 18314911 - 18314833
Alignment:
Q  297 ttcttaaacaagtcgaaaagcaatctatcgttgatgtagtgatgactagagagattaacctttcgtagtttgaaaagtg 375  Q
    ||||| ||||||| ||||||| ||  |||||||||||||| ||||  || || |||||||||||| |||||||||||||    
T  18314911 ttcttgaacaagtggaaaagcgattgatcgttgatgtagtaatgatcagcgaaattaacctttcggagtttgaaaagtg 18314833  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 18315021 - 18314967
Alignment:
Q  187 tggaaatggataaagacttcaatgttggtctttcgcggagagcagaaacaatacc 241  Q
    ||||||||||||||||| |||| |||||||| || ||||||||| || |||||||    
T  18315021 tggaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaatacc 18314967  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 51763783 - 51763737
Alignment:
Q  187 tggaaatggataaagacttcaatgttggtctttcgcggagagcagaa 233  Q
    |||||| |||||||||| |||||||||||||||| ||||||||||||    
T  51763783 tggaaaaggataaagacgtcaatgttggtctttcacggagagcagaa 51763737  T

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