View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5995_low_7 (Length: 362)

Name: NF5995_low_7
Description: NF5995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5995_low_7
NF5995_low_7
[»] chr6 (8 HSPs)
chr6 (16-345)||(21558614-21558943)
chr6 (93-126)||(15989838-15989871)
chr6 (124-201)||(21545417-21545497)
chr6 (92-125)||(32142375-32142408)
chr6 (92-136)||(690508-690552)
chr6 (92-132)||(2603644-2603684)
chr6 (92-128)||(6835709-6835745)
chr6 (92-128)||(8201457-8201493)
[»] chr7 (7 HSPs)
chr7 (92-129)||(8611809-8611846)
chr7 (92-136)||(28537009-28537053)
chr7 (92-127)||(40768725-40768760)
chr7 (92-126)||(38510158-38510192)
chr7 (92-125)||(5528384-5528417)
chr7 (101-130)||(37277944-37277973)
chr7 (92-128)||(10453156-10453192)
[»] chr3 (13 HSPs)
chr3 (92-125)||(15019778-15019811)
chr3 (92-129)||(42490037-42490074)
chr3 (92-127)||(45218715-45218750)
chr3 (92-127)||(46195876-46195911)
chr3 (92-126)||(35084586-35084620)
chr3 (92-130)||(43175729-43175767)
chr3 (92-129)||(38783690-38783727)
chr3 (93-125)||(29227420-29227452)
chr3 (93-125)||(40643316-40643348)
chr3 (101-129)||(42490556-42490584)
chr3 (90-126)||(43600866-43600902)
chr3 (92-128)||(45824134-45824170)
chr3 (92-120)||(48584133-48584161)
[»] chr1 (11 HSPs)
chr1 (92-133)||(29361492-29361533)
chr1 (91-126)||(14795168-14795203)
chr1 (92-126)||(2994134-2994168)
chr1 (92-126)||(15575111-15575145)
chr1 (91-129)||(26061909-26061947)
chr1 (92-129)||(41529105-41529142)
chr1 (99-127)||(1395677-1395705)
chr1 (92-120)||(5653736-5653764)
chr1 (92-128)||(16010913-16010949)
chr1 (53-126)||(34022382-34022455)
chr1 (93-125)||(44789268-44789300)
[»] chr2 (11 HSPs)
chr2 (92-131)||(19002899-19002938)
chr2 (92-126)||(5421432-5421466)
chr2 (94-131)||(1204906-1204943)
chr2 (92-125)||(7491702-7491735)
chr2 (92-133)||(28786972-28787013)
chr2 (92-125)||(40171830-40171863)
chr2 (90-130)||(5443909-5443948)
chr2 (92-120)||(8341729-8341757)
chr2 (93-129)||(28330740-28330776)
chr2 (92-128)||(39407773-39407809)
chr2 (92-128)||(40833465-40833501)
[»] scaffold1515 (1 HSPs)
scaffold1515 (92-126)||(1444-1478)
[»] chr8 (10 HSPs)
chr8 (92-126)||(25838721-25838755)
chr8 (92-125)||(11714438-11714471)
chr8 (100-133)||(16862005-16862038)
chr8 (92-129)||(23597257-23597294)
chr8 (92-129)||(23606179-23606216)
chr8 (53-127)||(31602924-31602998)
chr8 (94-126)||(8378085-8378117)
chr8 (92-128)||(22578202-22578238)
chr8 (90-126)||(26805071-26805107)
chr8 (94-130)||(45186904-45186940)
[»] chr5 (8 HSPs)
chr5 (99-133)||(440100-440134)
chr5 (92-129)||(8883194-8883231)
chr5 (92-125)||(10370547-10370580)
chr5 (92-125)||(35189177-35189210)
chr5 (92-128)||(3633918-3633954)
chr5 (93-129)||(35288110-35288146)
chr5 (100-128)||(35809484-35809512)
chr5 (92-128)||(35869926-35869962)
[»] chr4 (12 HSPs)
chr4 (92-130)||(45250065-45250103)
chr4 (92-129)||(30088846-30088883)
chr4 (92-125)||(34491931-34491964)
chr4 (99-128)||(42133815-42133844)
chr4 (92-129)||(48380569-48380606)
chr4 (98-126)||(388043-388071)
chr4 (92-128)||(23621635-23621671)
chr4 (101-129)||(37730747-37730775)
chr4 (91-127)||(43565993-43566029)
chr4 (99-127)||(48510891-48510919)
chr4 (92-128)||(55968538-55968574)
chr4 (92-128)||(55984362-55984398)
[»] scaffold0264 (1 HSPs)
scaffold0264 (90-126)||(18926-18962)


Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 345
Target Start/End: Original strand, 21558614 - 21558943
Alignment:
16 actaactatatgaaaagataaatgaatcttgtattggattgtaaaacgacatatactttaggtcaaannnnnnnccctaaaatgacatacaatttgggac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||       |||||||| |||||||||||||||||    
21558614 actaactatatgaaaagataaatgaatcttgtattggattgtaaaacgacatataatttaggttaaatttttttccctaaaacgacatacaatttgggac 21558713  T
116 ggaggaagtattatattactaagggatacatattacagacaacaatgtcgttaaaatccttgctagcagaaaacttagtgggataatacaaaaggaagnn 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
21558714 ggaggaagtattatattactaagggatacatattacagacaacaatgtcgttaaaatccttgctagcagaaaacttagtgggataatacaaaaggaagaa 21558813  T
216 nnnnnngagcgcatcgtgttactattatgacgcacacataatattattattcactgaaagatcggggcgttttccaaaaccataaaaacaagtctgtcta 315  Q
          ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
21558814 aaaaaagagcgcatcgtgttactattatgacgcgcacataatattattattcacttaaagatcggggcgttttccaaaaccataaaaacaagtctgtcta 21558913  T
316 atacaccacatctttagaggttcttttacc 345  Q
    |||||||||||||||||||||| |||||||    
21558914 atacaccacatctttagaggtttttttacc 21558943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 15989838 - 15989871
Alignment:
93 taaaatgacatacaatttgggacggaggaagtat 126  Q
    |||||||||||||||||||||||||||| |||||    
15989838 taaaatgacatacaatttgggacggagggagtat 15989871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 21545417 - 21545497
Alignment:
124 tattatattactaaggga-tacatattacagacaacaatgtcgttaaaatccttgctagc--agaaaacttagtgggataa 201  Q
    |||||||||| ||||||| ||||| |||||||||||||||||  ||||| |||| |||||   ||||||||| ||||||||    
21545417 tattatattattaagggaatacattttacagacaacaatgtcaataaaaaccttactagctaggaaaacttaatgggataa 21545497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 32142408 - 32142375
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagta 125  Q
    ||||||||||||||||||||||||||||| ||||    
32142408 ctaaaatgacatacaatttgggacggagggagta 32142375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 690508 - 690552
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtattatattacta 136  Q
    ||||||||||||||||||| ||| ||||| |||| ||||||||||    
690508 ctaaaatgacatacaatttaggatggagggagtactatattacta 690552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 2603644 - 2603684
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtattatatt 132  Q
    ||||| ||||||||||||||||||||||| ||||| |||||    
2603644 ctaaagtgacatacaatttgggacggagggagtatcatatt 2603684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 6835745 - 6835709
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtatta 128  Q
    ||||| ||||||||||||||||||||||| |||||||    
6835745 ctaaagtgacatacaatttgggacggagggagtatta 6835709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 8201493 - 8201457
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtatta 128  Q
    ||||| ||||||||||||||||||||||| |||||||    
8201493 ctaaagtgacatacaatttgggacggagggagtatta 8201457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 8611846 - 8611809
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtattat 129  Q
    ||||| ||||||||||||||||||||||||||||||||    
8611846 ctaaagtgacatacaatttgggacggaggaagtattat 8611809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 28537009 - 28537053
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtattatattacta 136  Q
    ||||||||||||||||||||||||||||| |||| ||||| ||||    
28537009 ctaaaatgacatacaatttgggacggagggagtactatataacta 28537053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 40768725 - 40768760
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtatt 127  Q
    ||||| ||||||||||||||||||||||||||||||    
40768725 ctaaagtgacatacaatttgggacggaggaagtatt 40768760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 38510158 - 38510192
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtat 126  Q
    ||||||||||||||||||||||||||||| |||||    
38510158 ctaaaatgacatacaatttgggacggagggagtat 38510192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 5528417 - 5528384
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagta 125  Q
    ||||| ||||||||||||||||||||||||||||    
5528417 ctaaagtgacatacaatttgggacggaggaagta 5528384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 130
Target Start/End: Original strand, 37277944 - 37277973
Alignment:
101 catacaatttgggacggaggaagtattata 130  Q
    ||||||||||||||||||||||||||||||    
37277944 catacaatttgggacggaggaagtattata 37277973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 10453156 - 10453192
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtatta 128  Q
    ||||| ||||||||||||||||||||||| |||||||    
10453156 ctaaagtgacatacaatttgggacggagggagtatta 10453192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 15019811 - 15019778
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagta 125  Q
    ||||||||||||||||||||||||||||||||||    
15019811 ctaaaatgacatacaatttgggacggaggaagta 15019778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 42490074 - 42490037
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtattat 129  Q
    ||||| ||||||||||||||||||||||||||||||||    
42490074 ctaaagtgacatacaatttgggacggaggaagtattat 42490037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 45218750 - 45218715
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtatt 127  Q
    ||||||||||||||||||||||||||| ||||||||    
45218750 ctaaaatgacatacaatttgggacggatgaagtatt 45218715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 46195876 - 46195911
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtatt 127  Q
    ||||| ||||||||||||||||||||||||||||||    
46195876 ctaaagtgacatacaatttgggacggaggaagtatt 46195911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 35084586 - 35084620
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtat 126  Q
    ||||||||||||||||||||||||||||| |||||    
35084586 ctaaaatgacatacaatttgggacggagggagtat 35084620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 43175767 - 43175729
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtattata 130  Q
    ||||| ||||||||||||||||||||||| |||||||||    
43175767 ctaaagtgacatacaatttgggacggagggagtattata 43175729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 38783690 - 38783727
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtattat 129  Q
    ||||| ||||||||||||||||||||||| ||||||||    
38783690 ctaaagtgacatacaatttgggacggagggagtattat 38783727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 29227420 - 29227452
Alignment:
93 taaaatgacatacaatttgggacggaggaagta 125  Q
    |||||||||||||||||||||||||||| ||||    
29227420 taaaatgacatacaatttgggacggagggagta 29227452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 40643348 - 40643316
Alignment:
93 taaaatgacatacaatttgggacggaggaagta 125  Q
    |||||||||||||||||||||||||||| ||||    
40643348 taaaatgacatacaatttgggacggagggagta 40643316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 129
Target Start/End: Original strand, 42490556 - 42490584
Alignment:
101 catacaatttgggacggaggaagtattat 129  Q
    |||||||||||||||||||||||||||||    
42490556 catacaatttgggacggaggaagtattat 42490584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 43600902 - 43600866
Alignment:
90 ccctaaaatgacatacaatttgggacggaggaagtat 126  Q
    |||||||  ||||||||||||||||||||||||||||    
43600902 ccctaaagcgacatacaatttgggacggaggaagtat 43600866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 45824134 - 45824170
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtatta 128  Q
    ||||| ||||||||||||||||||||||| |||||||    
45824134 ctaaagtgacatacaatttgggacggagggagtatta 45824170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 48584133 - 48584161
Alignment:
92 ctaaaatgacatacaatttgggacggagg 120  Q
    |||||||||||||||||||||||||||||    
48584133 ctaaaatgacatacaatttgggacggagg 48584161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 29361492 - 29361533
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtattatatta 133  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
29361492 ctaaaatgacatacaatttgggacggagggagtataatatta 29361533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 14795168 - 14795203
Alignment:
91 cctaaaatgacatacaatttgggacggaggaagtat 126  Q
    |||||||||||||||||||||||||||||| |||||    
14795168 cctaaaatgacatacaatttgggacggagggagtat 14795203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 2994168 - 2994134
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtat 126  Q
    ||||| |||||||||||||||||||||||||||||    
2994168 ctaaagtgacatacaatttgggacggaggaagtat 2994134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 15575111 - 15575145
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtat 126  Q
    ||||||||||||||||||||||||||||| |||||    
15575111 ctaaaatgacatacaatttgggacggagggagtat 15575145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 26061909 - 26061947
Alignment:
91 cctaaaatgacatacaatttgggacggaggaagtattat 129  Q
    |||||| |||||||||||||||||||||| |||||||||    
26061909 cctaaagtgacatacaatttgggacggagaaagtattat 26061947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 41529142 - 41529105
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtattat 129  Q
    ||||| ||||||||||||||||||||||| ||||||||    
41529142 ctaaagtgacatacaatttgggacggagggagtattat 41529105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 1395705 - 1395677
Alignment:
99 gacatacaatttgggacggaggaagtatt 127  Q
    |||||||||||||||||||||||||||||    
1395705 gacatacaatttgggacggaggaagtatt 1395677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 5653736 - 5653764
Alignment:
92 ctaaaatgacatacaatttgggacggagg 120  Q
    |||||||||||||||||||||||||||||    
5653736 ctaaaatgacatacaatttgggacggagg 5653764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 16010949 - 16010913
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtatta 128  Q
    ||||| ||||||||||||||||||||||| |||||||    
16010949 ctaaagtgacatacaatttgggacggagggagtatta 16010913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 34022382 - 34022455
Alignment:
53 attgtaaaacgacatatactttaggtcaaannnnnnnccctaaaatgacatacaatttgggacggaggaagtat 126  Q
    |||||||| ||||||||| |||||| ||||       |||||||  |||||||||||||||||||||| |||||    
34022382 attgtaaagcgacatataatttaggacaaaaaaatttccctaaagcgacatacaatttgggacggagggagtat 34022455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 44789300 - 44789268
Alignment:
93 taaaatgacatacaatttgggacggaggaagta 125  Q
    |||||||||||||||||||||||||||| ||||    
44789300 taaaatgacatacaatttgggacggagggagta 44789268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 19002938 - 19002899
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtattatat 131  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
19002938 ctaaagtgacatacaatttgggacggagggagtattatat 19002899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 5421466 - 5421432
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtat 126  Q
    ||||||||||||||||||||||||||||| |||||    
5421466 ctaaaatgacatacaatttgggacggagggagtat 5421432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 1204943 - 1204906
Alignment:
94 aaaatgacatacaatttgggacggaggaagtattatat 131  Q
    ||||||||||||||||||||||||||| ||||| ||||    
1204943 aaaatgacatacaatttgggacggagggagtataatat 1204906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 7491702 - 7491735
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagta 125  Q
    ||||||||||||||||||||||||||||| ||||    
7491702 ctaaaatgacatacaatttgggacggagggagta 7491735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 28786972 - 28787013
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtattatatta 133  Q
    ||||| ||||||||||||||||||||||| |||| |||||||    
28786972 ctaaagtgacatacaatttgggacggagggagtaatatatta 28787013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 40171863 - 40171830
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagta 125  Q
    ||||| ||||||||||||||||||||||||||||    
40171863 ctaaagtgacatacaatttgggacggaggaagta 40171830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 5443909 - 5443948
Alignment:
90 ccctaaaatgacatacaatttgggacggaggaagtattata 130  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
5443909 ccctaaaacgacatacaatt-gggacggaggaagtattata 5443948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 8341729 - 8341757
Alignment:
92 ctaaaatgacatacaatttgggacggagg 120  Q
    |||||||||||||||||||||||||||||    
8341729 ctaaaatgacatacaatttgggacggagg 8341757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 28330776 - 28330740
Alignment:
93 taaaatgacatacaatttgggacggaggaagtattat 129  Q
    |||||||| ||||||||||||||||||| ||||||||    
28330776 taaaatgatatacaatttgggacggagggagtattat 28330740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 39407809 - 39407773
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtatta 128  Q
    ||||| ||||||||||||||||||||||| |||||||    
39407809 ctaaagtgacatacaatttgggacggagggagtatta 39407773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 40833501 - 40833465
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtatta 128  Q
    ||||| ||||||||||||||||||||||| |||||||    
40833501 ctaaagtgacatacaatttgggacggagggagtatta 40833465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1515 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1515
Description:

Target: scaffold1515; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 1478 - 1444
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtat 126  Q
    ||||| |||||||||||||||||||||||||||||    
1478 ctaaagtgacatacaatttgggacggaggaagtat 1444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 25838721 - 25838755
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtat 126  Q
    ||||||||||||||||||||||||||||| |||||    
25838721 ctaaaatgacatacaatttgggacggagggagtat 25838755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 11714471 - 11714438
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagta 125  Q
    ||||||||||||||||||||||||||||| ||||    
11714471 ctaaaatgacatacaatttgggacggagggagta 11714438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 16862005 - 16862038
Alignment:
100 acatacaatttgggacggaggaagtattatatta 133  Q
    ||||||||||||||||||||| ||||||||||||    
16862005 acatacaatttgggacggagggagtattatatta 16862038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 23597294 - 23597257
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtattat 129  Q
    ||||| ||||||||||||||||||||||| ||||||||    
23597294 ctaaagtgacatacaatttgggacggagggagtattat 23597257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 23606216 - 23606179
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtattat 129  Q
    ||||| ||||||||||||||||||||||| ||||||||    
23606216 ctaaagtgacatacaatttgggacggagggagtattat 23606179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 31602924 - 31602998
Alignment:
53 attgtaaaacgacatatactttaggtcaaannnnnnnccctaaaatgacatacaatttgggacggaggaagtatt 127  Q
    |||||||||||||||||| ||| || ||||       |||||||  |||||||||||||||||||||| ||||||    
31602924 attgtaaaacgacatataatttgggacaaatttttttccctaaagcgacatacaatttgggacggagggagtatt 31602998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 8378117 - 8378085
Alignment:
94 aaaatgacatacaatttgggacggaggaagtat 126  Q
    |||||| ||||||||||||||||||||||||||    
8378117 aaaatgtcatacaatttgggacggaggaagtat 8378085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 22578238 - 22578202
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtatta 128  Q
    ||||| ||||||||||||||||||||||| |||||||    
22578238 ctaaagtgacatacaatttgggacggagggagtatta 22578202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 26805071 - 26805107
Alignment:
90 ccctaaaatgacatacaatttgggacggaggaagtat 126  Q
    |||||||| |||||||||||||||||||||| |||||    
26805071 ccctaaaacgacatacaatttgggacggagggagtat 26805107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 45186940 - 45186904
Alignment:
94 aaaatgacatacaatttgggacggaggaagtattata 130  Q
    |||| |||||||||||||||||||||| |||||||||    
45186940 aaaacgacatacaatttgggacggagggagtattata 45186904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 440100 - 440134
Alignment:
99 gacatacaatttgggacggaggaagtattatatta 133  Q
    |||||||||||||||||||||||||||| ||||||    
440100 gacatacaatttgggacggaggaagtataatatta 440134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 8883231 - 8883194
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtattat 129  Q
    ||||| ||| ||||||||||||||||||||||||||||    
8883231 ctaaagtgagatacaatttgggacggaggaagtattat 8883194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 10370580 - 10370547
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagta 125  Q
    ||||||||||||||||||||||||||||| ||||    
10370580 ctaaaatgacatacaatttgggacggagggagta 10370547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 35189210 - 35189177
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagta 125  Q
    ||||||||||||||||||||||||||||| ||||    
35189210 ctaaaatgacatacaatttgggacggagggagta 35189177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 3633954 - 3633918
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtatta 128  Q
    ||||| ||||||||||||||||||||||| |||||||    
3633954 ctaaagtgacatacaatttgggacggagggagtatta 3633918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 35288146 - 35288110
Alignment:
93 taaaatgacatacaatttgggacggaggaagtattat 129  Q
    ||||| |||||||||||||||||||||| ||||||||    
35288146 taaaacgacatacaatttgggacggagggagtattat 35288110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 35809484 - 35809512
Alignment:
100 acatacaatttgggacggaggaagtatta 128  Q
    |||||||||||||||||||||||||||||    
35809484 acatacaatttgggacggaggaagtatta 35809512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 35869962 - 35869926
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtatta 128  Q
    ||||| ||||||||||||||||||||||| |||||||    
35869962 ctaaagtgacatacaatttgggacggagggagtatta 35869926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 45250103 - 45250065
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtattata 130  Q
    ||||||||||||||||||||||||||||| |||| ||||    
45250103 ctaaaatgacatacaatttgggacggagggagtagtata 45250065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 30088846 - 30088883
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtattat 129  Q
    ||||| ||||||||||||||||||||||| ||||||||    
30088846 ctaaagtgacatacaatttgggacggagggagtattat 30088883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 34491931 - 34491964
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagta 125  Q
    ||||| ||||||||||||||||||||||||||||    
34491931 ctaaagtgacatacaatttgggacggaggaagta 34491964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 128
Target Start/End: Original strand, 42133815 - 42133844
Alignment:
99 gacatacaatttgggacggaggaagtatta 128  Q
    ||||||||||||||||||||||||||||||    
42133815 gacatacaatttgggacggaggaagtatta 42133844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 48380606 - 48380569
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtattat 129  Q
    ||||| ||||||||||||||||||||||| ||||||||    
48380606 ctaaagtgacatacaatttgggacggagggagtattat 48380569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 388071 - 388043
Alignment:
98 tgacatacaatttgggacggaggaagtat 126  Q
    |||||||||||||||||||||||||||||    
388071 tgacatacaatttgggacggaggaagtat 388043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 23621671 - 23621635
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtatta 128  Q
    ||||| ||||||||||||||||||||||| |||||||    
23621671 ctaaagtgacatacaatttgggacggagggagtatta 23621635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 129
Target Start/End: Complemental strand, 37730775 - 37730747
Alignment:
101 catacaatttgggacggaggaagtattat 129  Q
    |||||||||||||||||||||||||||||    
37730775 catacaatttgggacggaggaagtattat 37730747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 43566029 - 43565993
Alignment:
91 cctaaaatgacatacaatttgggacggaggaagtatt 127  Q
    |||||||||||||||||||| ||||||||| ||||||    
43566029 cctaaaatgacatacaatttaggacggagggagtatt 43565993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 48510891 - 48510919
Alignment:
99 gacatacaatttgggacggaggaagtatt 127  Q
    |||||||||||||||||||||||||||||    
48510891 gacatacaatttgggacggaggaagtatt 48510919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 55968574 - 55968538
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtatta 128  Q
    ||||| ||||||||||||||||||||||| |||||||    
55968574 ctaaagtgacatacaatttgggacggagggagtatta 55968538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 55984362 - 55984398
Alignment:
92 ctaaaatgacatacaatttgggacggaggaagtatta 128  Q
    ||||| ||||||||||||||||||||||| |||||||    
55984362 ctaaagtgacatacaatttgggacggagggagtatta 55984398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 18926 - 18962
Alignment:
90 ccctaaaatgacatacaatttgggacggaggaagtat 126  Q
    ||||||| ||||||||||||||||||||||| |||||    
18926 ccctaaagtgacatacaatttgggacggagggagtat 18962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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