View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5995_low_8 (Length: 330)
Name: NF5995_low_8
Description: NF5995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5995_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 97 - 320
Target Start/End: Complemental strand, 32747063 - 32746840
Alignment:
| Q |
97 |
aagcattaagtagcactgaaaacaaaaaatattggcagatctctgtgaaatgaagaatttacaggaacttgacctcagcagaaatagaatgagtggtgat |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32747063 |
aagcattaagtagcactgaaaacaaaaaatattggcaggtctctgtgaaatgaagaatttacaggaacttgacctcagcagaaatagaatgagtggtgat |
32746964 |
T |
|
| Q |
197 |
tttccacattgccttagcaacttgacaaacctccgagtacttgatttatcctccaataattttgttggaaatattccatctttcatcactagtctcaagt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32746963 |
tttccacattgccttagcaacttgacaaacctccaagtacttgatttatcctccaataattttgttggaaatattccatctttcatcactagtctcaagt |
32746864 |
T |
|
| Q |
297 |
ctcttgaatatctatctccctttg |
320 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
32746863 |
ctcttgaatatctatctctctttg |
32746840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 110 - 320
Target Start/End: Complemental strand, 4914040 - 4913829
Alignment:
| Q |
110 |
cactgaaaacaaaa-aatattggcagatctctgtgaaatgaagaatttacaggaacttgacctcagcagaaatagaatgagtggtgattttccacattgc |
208 |
Q |
| |
|
|||||||||||||| ||||||| ||| | |||| |||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||| || ||| |
|
|
| T |
4914040 |
cactgaaaacaaaataatattgacaggattatgtggaatgaagaatctgcaggaacttgacctcagcagaaatggaatgagtggttattttcctcaatgc |
4913941 |
T |
|
| Q |
209 |
cttagcaacttgacaaacctccgagtacttgatttatcctccaataattttgttggaaatattccatctttcatcactagtctcaagtctcttgaatatc |
308 |
Q |
| |
|
||||| |||||||||| |||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4913940 |
cttagaaacttgacaagcctcagagtacttgatttatcctcaaataattttgttggaaacattccatctttcatcattagtctcaagtctcttgaatatc |
4913841 |
T |
|
| Q |
309 |
tatctccctttg |
320 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
4913840 |
tatctctctttg |
4913829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University