View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5996_high_10 (Length: 271)
Name: NF5996_high_10
Description: NF5996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5996_high_10 |
 | |
|
| [»] scaffold0929 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 4 - 253
Target Start/End: Original strand, 6554417 - 6554666
Alignment:
| Q |
4 |
attattcttaaatggcttagtccttaaacaattcccaccttggttccatataccattctcaaaatgtgatggtgcaaatgtcctaagaaatgtcacaccc |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6554417 |
attactcttaaatggcttagtccttaaacaattcccaccttggttccatataccattctcaaaatgtgatggtgcaaatgtcctaagaaatgtcacaccc |
6554516 |
T |
|
| Q |
104 |
ttaaaattttctaagctatttaaggctctaaatgcagtcctaaaagcttttctatagccataatacattgttaaatcagtgacattttctaagagacaat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6554517 |
ttaaaattttctaagctatttaaggctctaaatgcagtcctaaaagcttttctatagccataatacattgttaaatcagtgacattttctaagagacaat |
6554616 |
T |
|
| Q |
204 |
aatgacatccaacaatttttcctttctcgtagaataccattggcttgtag |
253 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6554617 |
aatgacatccaacaatttttcctttctcatagaataccattggcttgtag |
6554666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 6543929 - 6544012
Alignment:
| Q |
31 |
acaattcccaccttggttccatataccattctcaaaatgtgatggtgcaaatgtcctaagaaatgtcacacccttaaaattttc |
114 |
Q |
| |
|
||||||||| |||| |||||| |||||||||||||||||||| | ||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
6543929 |
acaattccctcctttgttccaatctccattctcaaaatgtgatggagaaaatgtcctaaaaaatgtcacacctttaaaattttc |
6544012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 6364452 - 6364685
Alignment:
| Q |
12 |
taaatggcttagtccttaaacaattcccaccttggttccatataccattctcaaaatgtgatggtgcaaatgtcctaagaaatgtcacacccttaaaatt |
111 |
Q |
| |
|
||||||||||||| || | ||||||||||||||| ||||||| ||||| ||||||||||| |||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
6364452 |
taaatggcttagttctaacacaattcccaccttgattccataacccattttcaaaatgtgagggtgaaaatgtcctaagaaatgttatgcccttaaaatt |
6364551 |
T |
|
| Q |
112 |
ttctaagctatttaaggctctaaatgcagtcctaaaagcttttctatagccataatacattgttaaatcagtgacattttctaagagacaataatgacat |
211 |
Q |
| |
|
| ||| |||||| |||| |||||||||||||||| ||| ||||||| |||| ||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6364552 |
ctgtaaattatttatggctttaaatgcagtcctaaatgctcttctataaccatggtacatggttaaatcagggacattttctaagagacaataatgacat |
6364651 |
T |
|
| Q |
212 |
ccaacaatttttcctttctcgtagaataccattg |
245 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||| |
|
|
| T |
6364652 |
ccaacaattttttgtttctcatagaataccattg |
6364685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 6371093 - 6371326
Alignment:
| Q |
12 |
taaatggcttagtccttaaacaattcccaccttggttccatataccattctcaaaatgtgatggtgcaaatgtcctaagaaatgtcacacccttaaaatt |
111 |
Q |
| |
|
||||||||||||| || | ||||||||||||||| ||||||| ||||| |||||||||||||||| || ||||||||||||||| | ||||||||||| |
|
|
| T |
6371093 |
taaatggcttagttctaacacaattcccaccttgattccataacccattttcaaaatgtgatggtgaaagtgtcctaagaaatgttatgcccttaaaatt |
6371192 |
T |
|
| Q |
112 |
ttctaagctatttaaggctctaaatgcagtcctaaaagcttttctatagccataatacattgttaaatcagtgacattttctaagagacaataatgacat |
211 |
Q |
| |
|
| ||| |||| | |||| |||||||||||||||| ||| ||||||| |||| ||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6371193 |
ctttaaattattgatggctttaaatgcagtcctaaatgctcttctataaccatggtacatggttaaatcagggacattttctaagagacaataatgacat |
6371292 |
T |
|
| Q |
212 |
ccaacaatttttcctttctcgtagaataccattg |
245 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||| |
|
|
| T |
6371293 |
ccaacaattttttgtttctcatagaataccattg |
6371326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 2338 - 2416
Alignment:
| Q |
167 |
tacattgttaaatcagtgacattttctaagagacaataatgacatccaacaatttttcctttctcgtagaataccattg |
245 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
2338 |
tacatggttaaatcagggacattttctaagagacaataatgacatccaacaattttttgtttctcatagaataccattg |
2416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University