View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5996_high_7 (Length: 409)

Name: NF5996_high_7
Description: NF5996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5996_high_7
NF5996_high_7
[»] chr2 (9 HSPs)
chr2 (105-235)||(29455275-29455407)
chr2 (250-330)||(29455477-29455557)
chr2 (250-330)||(43564267-43564347)
chr2 (190-235)||(43564151-43564196)
chr2 (250-290)||(7574085-7574125)
chr2 (250-290)||(41646702-41646742)
chr2 (250-290)||(16668680-16668720)
chr2 (300-330)||(7574014-7574044)
chr2 (300-330)||(16668609-16668639)
[»] chr8 (6 HSPs)
chr8 (250-330)||(918909-918989)
chr8 (250-290)||(8150485-8150525)
chr8 (250-290)||(10186462-10186502)
chr8 (250-290)||(11428136-11428176)
chr8 (198-231)||(919075-919108)
chr8 (254-290)||(20172070-20172106)
[»] scaffold0516 (1 HSPs)
scaffold0516 (250-290)||(3355-3395)
[»] chr7 (7 HSPs)
chr7 (250-290)||(5768058-5768098)
chr7 (250-290)||(25419569-25419609)
chr7 (250-290)||(39066864-39066904)
chr7 (250-290)||(47233816-47233856)
chr7 (300-330)||(5767987-5768017)
chr7 (300-330)||(25419498-25419528)
chr7 (254-290)||(44393780-44393816)
[»] chr6 (3 HSPs)
chr6 (250-290)||(13433447-13433487)
chr6 (250-290)||(16712103-16712143)
chr6 (300-330)||(13433376-13433406)
[»] chr5 (4 HSPs)
chr5 (250-290)||(36991151-36991191)
chr5 (250-290)||(21605061-21605101)
chr5 (250-286)||(37301986-37302022)
chr5 (300-330)||(36991232-36991262)
[»] chr4 (13 HSPs)
chr4 (250-290)||(2504995-2505035)
chr4 (250-290)||(46092411-46092451)
chr4 (250-290)||(46134936-46134976)
chr4 (250-290)||(53830499-53830539)
chr4 (250-290)||(20036391-20036431)
chr4 (250-290)||(34737793-34737833)
chr4 (250-290)||(5430821-5430861)
chr4 (300-330)||(2504924-2504954)
chr4 (300-330)||(34737725-34737755)
chr4 (300-330)||(46092492-46092522)
chr4 (300-330)||(46135017-46135047)
chr4 (300-330)||(53830428-53830458)
chr4 (250-290)||(2500638-2500678)
[»] chr3 (5 HSPs)
chr3 (250-290)||(35870451-35870491)
chr3 (250-290)||(48266372-48266412)
chr3 (250-290)||(52349834-52349874)
chr3 (300-330)||(48266453-48266483)
chr3 (300-330)||(52349915-52349945)
[»] chr1 (6 HSPs)
chr1 (250-290)||(13786337-13786377)
chr1 (250-290)||(22912522-22912562)
chr1 (250-290)||(25807766-25807806)
chr1 (250-290)||(23726019-23726058)
chr1 (300-330)||(13786418-13786448)
chr1 (300-329)||(22912455-22912484)


Alignment Details
Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 105 - 235
Target Start/End: Original strand, 29455275 - 29455407
Alignment:
Q  105 gtgtctcctaatattgtcagttacacataattacaaatacatg--tgcggctgacatttgtaactcccatttacaacccnnnnnnnntcatttccttaat 202  Q
    |||||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||||||||||        |||||||||||||    
T  29455275 gtgtctcctaatattgtcagttacacatatatacaaatacatgtatgcggctgacatttgtaactcccatttacaacccaaaaaaaatcatttccttaat 29455374  T
Q  203 ttttgattaataattgacaacacttattatatg 235  Q
    ||||||||||||||||| |||||||||||||||    
T  29455375 ttttgattaataattgataacacttattatatg 29455407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 250 - 330
Target Start/End: Original strand, 29455477 - 29455557
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctcttcannnnnnnctaagcttatatatatgttgcttatgttatc 330  Q
    ||||||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||    
T  29455477 gttacattttaaaattattcatattcttaattaatcctcttcatttttttctaagcttatatatatgttgcttatgttatc 29455557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 250 - 330
Target Start/End: Original strand, 43564267 - 43564347
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctcttcannnnnnnctaagcttatatatatgttgcttatgttatc 330  Q
    |||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||    
T  43564267 gttacattttaaaattattcatattcttaatcaatccttttcatttttttctaagcttatatatatgttgcttatgttatc 43564347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 43564151 - 43564196
Alignment:
Q  190 tcatttccttaatttttgattaataattgacaacacttattatatg 235  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  43564151 tcattaccttaatttttgattaataattgacaacacttattatatg 43564196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 7574125 - 7574085
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7574125 gttacattttaaaattattcatattcttaatcaatcctctt 7574085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 41646742 - 41646702
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41646742 gttacattttaaaattattcatattcttaatcaatcctctt 41646702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 16668720 - 16668680
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  16668720 gttacattttaaaattattcatattcttgatcaatcctctt 16668680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 330
Target Start/End: Complemental strand, 7574044 - 7574014
Alignment:
Q  300 ctaagcttatatatatgttgcttatgttatc 330  Q
    |||||||||||||||||||||||||||||||    
T  7574044 ctaagcttatatatatgttgcttatgttatc 7574014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 330
Target Start/End: Complemental strand, 16668639 - 16668609
Alignment:
Q  300 ctaagcttatatatatgttgcttatgttatc 330  Q
    |||||||||||||||||||||||||||||||    
T  16668639 ctaagcttatatatatgttgcttatgttatc 16668609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 330
Target Start/End: Complemental strand, 918989 - 918909
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctcttcannnnnnnctaagcttatatatatgttgcttatgttatc 330  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| |||| |||||||||    
T  918989 gttacattttaaaattattcatattcttaatcaatcctcttcatttttttctaagcttatatatatattgcatatgttatc 918909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 8150525 - 8150485
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  8150525 gttacattttaaaattattcatattcttaatcagtcctctt 8150485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 10186462 - 10186502
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  10186462 gttacattttaaaattgttcatattcttaatcaatcctctt 10186502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 11428176 - 11428136
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  11428176 gttacattttaaaattattcatattcttagtcaatcatctt 11428136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 919108 - 919075
Alignment:
Q  198 ttaatttttgattaataattgacaacacttatta 231  Q
    ||||||||||||| ||||||||||||||||||||    
T  919108 ttaatttttgattgataattgacaacacttatta 919075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 20172070 - 20172106
Alignment:
Q  254 cattttaaaattattcatattcttaatcaatcctctt 290  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  20172070 cattttaaaattattcatattcttagtcaatcatctt 20172106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 3355 - 3395
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3355 gttacattttaaaattattcatattcttaatcaatcctctt 3395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 5768098 - 5768058
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5768098 gttacattttaaaattattcatattcttaatcaatcctctt 5768058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 25419609 - 25419569
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25419609 gttacattttaaaattattcatattcttaatcaatcctctt 25419569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 39066904 - 39066864
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39066904 gttacattttaaaattattcatattcttaatcaatcctctt 39066864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 47233856 - 47233816
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47233856 gttacattttaaaattattcatattcttaatcaatcctctt 47233816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 330
Target Start/End: Complemental strand, 5768017 - 5767987
Alignment:
Q  300 ctaagcttatatatatgttgcttatgttatc 330  Q
    |||||||||||||||||||||||||||||||    
T  5768017 ctaagcttatatatatgttgcttatgttatc 5767987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 330
Target Start/End: Complemental strand, 25419528 - 25419498
Alignment:
Q  300 ctaagcttatatatatgttgcttatgttatc 330  Q
    |||||||||||||||||||||||||||||||    
T  25419528 ctaagcttatatatatgttgcttatgttatc 25419498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 44393780 - 44393816
Alignment:
Q  254 cattttaaaattattcatattcttaatcaatcctctt 290  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  44393780 cattttaaaattattcatattcttagtcaatcatctt 44393816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 13433487 - 13433447
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13433487 gttacattttaaaattattcatattcttaatcaatcctctt 13433447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 16712143 - 16712103
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  16712143 gttacattttaaaattattcatattcttaatcaatcatctt 16712103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 330
Target Start/End: Complemental strand, 13433406 - 13433376
Alignment:
Q  300 ctaagcttatatatatgttgcttatgttatc 330  Q
    |||||||||||||||||||||||||||||||    
T  13433406 ctaagcttatatatatgttgcttatgttatc 13433376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 36991151 - 36991191
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36991151 gttacattttaaaattattcatattcttaatcaatcctctt 36991191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 21605101 - 21605061
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  21605101 gttaaattttaaaattattcatattcttaatcaatcctctt 21605061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 37302022 - 37301986
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcc 286  Q
    |||||||||||||||||||||||||||||||||||||    
T  37302022 gttacattttaaaattattcatattcttaatcaatcc 37301986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 330
Target Start/End: Original strand, 36991232 - 36991262
Alignment:
Q  300 ctaagcttatatatatgttgcttatgttatc 330  Q
    |||||||||||||||||||||||||||||||    
T  36991232 ctaagcttatatatatgttgcttatgttatc 36991262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 2505035 - 2504995
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2505035 gttacattttaaaattattcatattcttaatcaatcctctt 2504995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 46092411 - 46092451
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46092411 gttacattttaaaattattcatattcttaatcaatcctctt 46092451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 46134936 - 46134976
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46134936 gttacattttaaaattattcatattcttaatcaatcctctt 46134976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 53830539 - 53830499
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  53830539 gttacattttaaaattattcatattcttaatcaatcctctt 53830499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 20036391 - 20036431
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  20036391 gttacattttaaaattaatcatattcttaatcaatcctctt 20036431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 34737833 - 34737793
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  34737833 gttacattttaaaattattcatattcttgatcaatcctctt 34737793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 5430821 - 5430861
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  5430821 gttacattttaaaattattcatattcttagtcaatcatctt 5430861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 330
Target Start/End: Complemental strand, 2504954 - 2504924
Alignment:
Q  300 ctaagcttatatatatgttgcttatgttatc 330  Q
    |||||||||||||||||||||||||||||||    
T  2504954 ctaagcttatatatatgttgcttatgttatc 2504924  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 330
Target Start/End: Complemental strand, 34737755 - 34737725
Alignment:
Q  300 ctaagcttatatatatgttgcttatgttatc 330  Q
    |||||||||||||||||||||||||||||||    
T  34737755 ctaagcttatatatatgttgcttatgttatc 34737725  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 330
Target Start/End: Original strand, 46092492 - 46092522
Alignment:
Q  300 ctaagcttatatatatgttgcttatgttatc 330  Q
    |||||||||||||||||||||||||||||||    
T  46092492 ctaagcttatatatatgttgcttatgttatc 46092522  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 330
Target Start/End: Original strand, 46135017 - 46135047
Alignment:
Q  300 ctaagcttatatatatgttgcttatgttatc 330  Q
    |||||||||||||||||||||||||||||||    
T  46135017 ctaagcttatatatatgttgcttatgttatc 46135047  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 330
Target Start/End: Complemental strand, 53830458 - 53830428
Alignment:
Q  300 ctaagcttatatatatgttgcttatgttatc 330  Q
    |||||||||||||||||||||||||||||||    
T  53830458 ctaagcttatatatatgttgcttatgttatc 53830428  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 2500678 - 2500638
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||  ||||||| ||||||||||||    
T  2500678 gttacattttaaaattatttgtattcttgatcaatcctctt 2500638  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 35870451 - 35870491
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35870451 gttacattttaaaattattcatattcttaatcaatcctctt 35870491  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 48266372 - 48266412
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48266372 gttacattttaaaattattcatattcttaatcaatcctctt 48266412  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 52349834 - 52349874
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  52349834 gttacattttaaaattatttatattcttaatcaatcctctt 52349874  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 330
Target Start/End: Original strand, 48266453 - 48266483
Alignment:
Q  300 ctaagcttatatatatgttgcttatgttatc 330  Q
    |||||||||||||||||||||||||||||||    
T  48266453 ctaagcttatatatatgttgcttatgttatc 48266483  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 330
Target Start/End: Original strand, 52349915 - 52349945
Alignment:
Q  300 ctaagcttatatatatgttgcttatgttatc 330  Q
    |||||||||||||||||||||||||||||||    
T  52349915 ctaagcttatatatatgttgcttatgttatc 52349945  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 13786337 - 13786377
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13786337 gttacattttaaaattattcatattcttaatcaatcctctt 13786377  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 22912562 - 22912522
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22912562 gttacattttaaaattattcatattcttaatcaatcctctt 22912522  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 25807806 - 25807766
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25807806 gttacattttaaaattattcatattcttaatcaatcctctt 25807766  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 23726058 - 23726019
Alignment:
Q  250 gttacattttaaaattattcatattcttaatcaatcctctt 290  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  23726058 gttacattttaaa-ttattcatattcttaatcaatcctctt 23726019  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 330
Target Start/End: Original strand, 13786418 - 13786448
Alignment:
Q  300 ctaagcttatatatatgttgcttatgttatc 330  Q
    |||||||||||||||||||||||||||||||    
T  13786418 ctaagcttatatatatgttgcttatgttatc 13786448  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 329
Target Start/End: Complemental strand, 22912484 - 22912455
Alignment:
Q  300 ctaagcttatatatatgttgcttatgttat 329  Q
    ||||||||||||||||||||||||||||||    
T  22912484 ctaagcttatatatatgttgcttatgttat 22912455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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