View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5996_low_16 (Length: 237)
Name: NF5996_low_16
Description: NF5996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5996_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 13674735 - 13674956
Alignment:
| Q |
1 |
tatactggtcaaatattgagaacatggttttcacgtcgttgttcatgagctacatttgtgtgaaccagatgcatccatttgagttggacgatggatgatg |
100 |
Q |
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| T |
13674735 |
tatactggtcaaatattgagaacatggttttcacgtcgttgctcatgagctacatttgtgtgaaccaaatgcatccatttgagttgaacgatggatgatg |
13674834 |
T |
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| Q |
101 |
atactcaacaatgtccactctccttgtatctttgtggttaagtcaacaattgatttagtccagttgattcttcaacccagacagtgagatatcaacttga |
200 |
Q |
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| T |
13674835 |
atactcaacaatgtccactctccttgtatctttgtggttaagtcaacaattgatttagtccagttgattcttcaacccagacagtgagatatcaacttga |
13674934 |
T |
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| Q |
201 |
aacctggacatattgatcttct |
222 |
Q |
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| T |
13674935 |
aacctggacatattgattttct |
13674956 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 37233361 - 37233282
Alignment:
| Q |
89 |
cgatggatgatgatactcaacaatgtccactctccttgtatctttgtggttaagtcaacaattgatttagtccagttgat |
168 |
Q |
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| T |
37233361 |
cgatggacgacgatactcaacattgtccaccctccttgtgtctatgtggtcaagtcgccagttgatttaatccagttgat |
37233282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 18905517 - 18905566
Alignment:
| Q |
90 |
gatggatgatgatactcaacaatgtccactctccttgtatctttgtggtt |
139 |
Q |
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| T |
18905517 |
gatggacgatgatactcaacaatgtccaccatccttgtgtctttgtggtt |
18905566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 588543 - 588617
Alignment:
| Q |
101 |
atactcaacaatgtccactctccttgtatctttgtggttaagtcaacaattgatttagtccagttgattcttcaa |
175 |
Q |
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| T |
588543 |
atactcaacattgtccaccttccttatgtctatgtggttaagtcaatgattgatttagtctagatgatccttcaa |
588617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 7493013 - 7492900
Alignment:
| Q |
14 |
tattgagaacatggttttcacgtcgttgttcatgagctacatttgtgtgaaccagatgcatccatttgagttggacgatggatgatgatactcaacaatg |
113 |
Q |
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| T |
7493013 |
tattgagaacatggttctcacgttgtcattccttagcttcatctttgtgaactagacgcttccagttgagttgatcgatgaatgttgatactcaacactg |
7492914 |
T |
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| Q |
114 |
tccactctccttgt |
127 |
Q |
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|||| |||||||| |
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| T |
7492913 |
tccatcctccttgt |
7492900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 11237450 - 11237517
Alignment:
| Q |
112 |
tgtccactctccttgtatctttgtggttaagtcaacaattgatttagtccagttgattcttcaaccca |
179 |
Q |
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| T |
11237450 |
tgtccaccctccttgtgtctttgtggttgagtcgacaattgatttgatccaactgatccttcaaccca |
11237517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 18690529 - 18690605
Alignment:
| Q |
99 |
tgatactcaacaatgtccactctccttgtatctttgtggttaagtcaacaattgatttagtccagttgattcttcaa |
175 |
Q |
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| T |
18690529 |
tgatactcaacactgtccaccctccttgtgtctttgtggttgagtcaatggttaatttggtccaattgatccttcaa |
18690605 |
T |
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