View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5996_low_18 (Length: 228)
Name: NF5996_low_18
Description: NF5996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5996_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 24230609 - 24230405
Alignment:
| Q |
8 |
gaagatgatattattataaataaaagtgagttacattcatcgttcatttcaacaaccagtaagatgtattatcttatgacgacggattgttataacgcaa |
107 |
Q |
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| T |
24230609 |
gaaggtgatattattataactaaaagtgaggtacattcatcgatcatttcaacaaccagtaagatgtattatcttatgacggcggattgttattacgcaa |
24230510 |
T |
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| Q |
108 |
ataagtttttggaatgaaaatgaactcctttgcattgagtttgattgtactatttatagaagaaaaaacataaactaacatatagaatgcatgaatgtca |
207 |
Q |
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| T |
24230509 |
acaagtttttggaatgaaaatgaactcctttgcattgagtttgattgtactatttatagaagaaaaaacataaactaacatatagaatgcatgaatgtga |
24230410 |
T |
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| Q |
208 |
tgtgt |
212 |
Q |
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||||| |
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| T |
24230409 |
tgtgt |
24230405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 29456817 - 29456759
Alignment:
| Q |
110 |
aagtttttggaatgaaaatgaactcctttgcattgagtttgattgtactatttatagaa |
168 |
Q |
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| T |
29456817 |
aagtttttggaacgaaaataaactcctttgcatgaagtttgattctactatttatagaa |
29456759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 41106758 - 41106810
Alignment:
| Q |
113 |
tttttggaatgaaaatgaactcctttgcattgagtttgattgtactatttata |
165 |
Q |
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| T |
41106758 |
tttttgaaatgaaaataaactcttttgcatggagtttgattctactatttata |
41106810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 27875389 - 27875434
Alignment:
| Q |
108 |
ataagtttttggaatgaaaatgaactcctttgcattgagtttgatt |
153 |
Q |
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||||| ||||||||||||||||||||||||| ||| ||||||||| |
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| T |
27875389 |
ataagattttggaatgaaaatgaactcctttacatcaagtttgatt |
27875434 |
T |
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