View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5996_low_2 (Length: 535)
Name: NF5996_low_2
Description: NF5996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5996_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Original strand, 41706439 - 41706956
Alignment:
| Q |
1 |
atttttacgaatttatggacggtggagatggagtgaggaggaaagagagagtggggtgtttgatgttgatgaacggtggagatgaagctgaaatgagcgg |
100 |
Q |
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| T |
41706439 |
atttttacgaatttatggacggtggagatggagtgaggaggaaagagagagtggggtgtttgatgtttatgaacggtggagatgaagctgaaatgagcgg |
41706538 |
T |
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| Q |
101 |
tgggcccggaggagtacttgggaattatcaacagcaagggtttgaagttgaatatgatcttgaaaagaagcgcgtgggttttgctaggagaaagtgcgcg |
200 |
Q |
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| T |
41706539 |
tgggcccggaggagtacttgggaattatcaacagcaagggtttgaagttgaatatgatcttgaaaagaagcgcgtgggttttgctaggagaaagtgcgcg |
41706638 |
T |
|
| Q |
201 |
tcgctttgggatagactcaatcgcgacaaaaactagcgtatatacctgcacctgcacgggtgcatttggataattggattctttcccgtttcagacacgg |
300 |
Q |
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| T |
41706639 |
tcgctttgggatagactcaatcgcgacaaaaactagcgtatatacctgcacctgcacgggtgcatttggataattggattctttcccgtttcagacacgg |
41706738 |
T |
|
| Q |
301 |
gtcgggtcnnnnnnnncttctgtgag-aataaaattgcttatgcatggttcatccactcgtgtgctcttgagtggtggatgac-gtaactatgtatttat |
398 |
Q |
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| T |
41706739 |
gtcgggtcttatttttcttctgtgagaaataaaattgcttatgcatggttcatacactcgtgtgctcttgagtggtgaatgactgtaactatgtatttat |
41706838 |
T |
|
| Q |
399 |
atgcatgtatannnnnnngttaattaattataataatcttacgtatgcatgaatgtacatatttttattgtttgaatgaggatgttgtcactgttaagat |
498 |
Q |
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| T |
41706839 |
atgcatgtatatttttttgttaattaattataataatcttacgtatgcatgaatgtacatatttttattgtttgaatgaggatgttgtcactgttaagat |
41706938 |
T |
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| Q |
499 |
gatgacatgagaaaatct |
516 |
Q |
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| T |
41706939 |
gatgacatgagaaaatct |
41706956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 3743455 - 3743253
Alignment:
| Q |
12 |
tttatggacggtggagatggagtgaggaggaaagagagagtggggtgtttgatgttgatgaacggtggagatgaagctgaaatgagcggtgggcccggag |
111 |
Q |
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| T |
3743455 |
tttatggacggtggcgatggtattagaaggaaagggaaagtggggtgtatgatgttgatgaacggtgaagatgaaactgagttggatggtggacctggag |
3743356 |
T |
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| Q |
112 |
gagtacttgggaattatcaacagcaagggtttgaagttgaatatgatcttgaaaagaagcgcgtgggttttgctaggagaaagtgcgcgtcgctttggga |
211 |
Q |
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| T |
3743355 |
ctactctagggaattatcaacagcaagggtttgaggtggtttatgatctggagaaagagcgcgtggggttcgcgaagaaagagtgcgcgttgctttggga |
3743256 |
T |
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| Q |
212 |
tag |
214 |
Q |
| |
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||| |
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| T |
3743255 |
tag |
3743253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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