View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5996_low_3 (Length: 508)
Name: NF5996_low_3
Description: NF5996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5996_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 16 - 490
Target Start/End: Original strand, 44198698 - 44199169
Alignment:
| Q |
16 |
atcaacacctgaggaggaaaataaatttgagnnnnnnncaacacatttaatttctctccatttttgggttaagggtaagggcatcattgtcaccatgtac |
115 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44198698 |
atcagcacctgaggaggaaaataaatttgagaaaaaaacaacacatttaatttctctctatttttgggttaagggtaagggcatcattgtcaccatgtac |
44198797 |
T |
|
| Q |
116 |
cccatcacctctatatatactcactttcccacaatcatgtttctcacttcatctttataaatctttctaagtttcttctatatggtactatgttttattg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44198798 |
cccatcacctctatatatactcactttcccacaatcatgtttctcacttcatctttataaatctttctaagtttct---atatggtactatgttttattg |
44198894 |
T |
|
| Q |
216 |
caaagtaccaacaacaccatattcctagttagtacatatattcactatttaaaacctttcttgcacactattcaatatgccttcactctcagaagcttat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44198895 |
caaagtaccaacaacaccatattcctagttagtacatatattcactatttaaaacctttcttgcacactattcaatatgccttcactctcagaagcctac |
44198994 |
T |
|
| Q |
316 |
agagctcaccctgtgcatgttaaccacaagcaccctgatttcaattcactacaagaacttcctgaatcttacacttggaaccaccttgatgatcacaccc |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44198995 |
agagctcaccctgtgcatgttaaccacaagcaccctgatttcaattcactacaagaacttcctgaatcttacacttggaaccaccttgatgatcacaccc |
44199094 |
T |
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| Q |
416 |
ttattaaggagggtactactagtagtattgttcccgttattgatctcaatgacccaaatgcttcaaagttaatag |
490 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44199095 |
ttattaaggagggtactactagtagtattgttcccgttattgatctcaatgacccaaatgcttcaaagttaatag |
44199169 |
T |
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