View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5996_low_5 (Length: 457)

Name: NF5996_low_5
Description: NF5996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5996_low_5
NF5996_low_5
[»] chr4 (1 HSPs)
chr4 (1-457)||(41705995-41706451)


Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 41706451 - 41705995
Alignment:
Q  1 aattcgtaaaaataattcttcctaggcaacaccacactcgaattcatcccaacaaaacgcaacgtcaccgccggcactatcgccgccgtgttcaaataat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41706451 aattcgtaaaaataattcttcctaggcaacaccacactcgaattcatcccaacaaaacgcagcgtcaccgccggcactatcgccgccgtgttcaaataat 41706352  T
Q  101 aacatggtgaaagcccagttttctgttcaatctcaggcgccctccggttagatttcctagcacgacggtcaaacccttccaccaccgagttataaaattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41706351 aacatggtgaaagcccagttttctgttcaatctcaggcgccctccggttagatttcctagcacgacggtcaaacccttccaccaccgagttataaaattt 41706252  T
Q  201 ctccggtaacatcgtaaatgtcgtgccggaatccactactacaccgccgtcacctttcttattcaccctccgtaaaatctttggtgctggaacggtcttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41706251 ctccggtaacatcgtaaatgtcgtgccggaatccactactacaccgccgtcacctttcttattcaccctccgtaaaatctttggtgctggaacggtcttt 41706152  T
Q  301 tttccgacagagattcctttcaagccaacagtgtaaaaataaggatgttttggattttcaagcattgaagtataaacaaactcaacaccttcatcaccct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  41706151 tttccgacagagattcctttcaagccaacagtgtaaaaataagaatgttttggattttcaagcattgaagtataaacaaactcaacaacttcatcaccat 41706052  T
Q  401 tgctctgtttttcatcattgcaacgacctcatatgagtgtacttggttttcgaattc 457  Q
    |||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||    
T  41706051 tgctctgtttttcatcattgtaacgacctaatatgagtggacttggttttcgaattc 41705995  T

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