View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5996_low_6 (Length: 426)
Name: NF5996_low_6
Description: NF5996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5996_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Complemental strand, 25990918 - 25990521
Alignment:
| Q |
19 |
taacgttgagtatcaatggatcctgctgctaactctttttctcttgtgaatataataaatccaattccttcttgtgtatttgagtcatgaaaaccaaaac |
118 |
Q |
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| T |
25990918 |
taacgttgagtatcaatggatcctgctgctaactctttttctcttgtgaatataatacatccaattccttcttgtgtatttgagtcatgaaaaccaaaac |
25990819 |
T |
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| Q |
119 |
ctttc-accattcatgccatcaatgggcacactaccatctctatattttaatgacaccctcatctattaaactattgtaaaaatgaaaagaaaataagat |
217 |
Q |
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| T |
25990818 |
ctttccaccattcatgccatcaatgggcacactaccctctctatattttaatgccaccctcatctattaaactattgtaaaaatgaaaagaaaataagat |
25990719 |
T |
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| Q |
218 |
atgttgtattaaatttctagttgaacagaaattaaaatcaattatttcgtatttgacttttcgaaagtaatatgtcaatgtcaaatattcctcttgcttt |
317 |
Q |
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| T |
25990718 |
atgttgtattaaacttctagttgaacagaaatt--aatcaattatttcgtatttgacttttcaaaagcaacatgtcaatgtcaaatattcctcttgcttt |
25990621 |
T |
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| Q |
318 |
gaaaactacttcattttgagaggaatgattagttaattagtttatatatccctgtgtcaagctataaataa--accataatacacacaaattaccattct |
415 |
Q |
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| T |
25990620 |
gaaaacta-ttcattttgagaggaatgattagttaattagtttatatatccctgtgccaagctataaataaacaccttaatacacacaaattaccattct |
25990522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 286 - 365
Target Start/End: Original strand, 25323293 - 25323371
Alignment:
| Q |
286 |
aatatgtcaatgtcaaatattcctcttgctttgaaaactacttcattttgagaggaatgattagttaattagtttatata |
365 |
Q |
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| T |
25323293 |
aatatgtcaatgtcaaacattcctcttactttgaaaacta-ttcattttgagagcaatgattggttaattagtttatata |
25323371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 286 - 365
Target Start/End: Original strand, 26152986 - 26153064
Alignment:
| Q |
286 |
aatatgtcaatgtcaaatattcctcttgctttgaaaactacttcattttgagaggaatgattagttaattagtttatata |
365 |
Q |
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| T |
26152986 |
aatatgtcaatgtcaaacattcctcttactttgaaaacta-ttcattttgagagcaatgattggttaattagtttatata |
26153064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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