View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5996_low_8 (Length: 352)
Name: NF5996_low_8
Description: NF5996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5996_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 7 - 333
Target Start/End: Original strand, 46782375 - 46782701
Alignment:
| Q |
7 |
tccaagaatatagaaactaaatccatggagatgcatggggtggtctaacggtgctaccaaatttgtcccttggaaaacaacctccactgctgagccatat |
106 |
Q |
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| T |
46782375 |
tccaacaacatagaaactaaatccatggagatgcatagggtggtctaacggtgctaccaaatttgtcccttggaaaacaacctccactgctgagccatat |
46782474 |
T |
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| Q |
107 |
tttagaactttaactttagttcctctccttggtgtattcaaggtcataggcaaacaatttccattgaagttaaatataaatggtggaaacctgggaaatc |
206 |
Q |
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| T |
46782475 |
tttagaactttaactttagttcctctccttggtgtattcaaggtcataggcaaagaatttccattgaagttaaatataaatggtggaaacctgggaaatc |
46782574 |
T |
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| Q |
207 |
cctttctgaataccccattgatatgatagtaataagcttctagtatgtcaaatttagtaggggtttgaaaacttatgttgttcatgctagcagataaaat |
306 |
Q |
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| T |
46782575 |
cctttctgaataccccattgatatgatagtaataagcttctagtatgtcaaatttattaggggtttgaaaacttatgttgttcatgctagcagataaaat |
46782674 |
T |
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| Q |
307 |
ggttccatttgggccttcacaggatcg |
333 |
Q |
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| T |
46782675 |
ggttccatttgggccttcacaggatcg |
46782701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 46789820 - 46790136
Alignment:
| Q |
16 |
atagaaactaaatccatggagatgcatggggtggtctaacggtgct---accaaatttgtcccttggaaaacaacctccactgctgagccatattttaga |
112 |
Q |
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| T |
46789820 |
atagaaactaaatccatggagatgcatgggatggtctaaccctcctcctaccaaatttgtcccctggaaaacaagttccactgttgagccatattttagt |
46789919 |
T |
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| Q |
113 |
actttaactttagttcctctccttggtgtattcaaggtcataggcaaacaatttccattgaagttaaatataaatggtggaaacctgggaaatccctttc |
212 |
Q |
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| T |
46789920 |
actttcactttagttcctctttttggtgtattcaaggtcaaagggaaactatctgcagtgaagttaaatattaaaggtggaaaacttggaaatcccttgc |
46790019 |
T |
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| Q |
213 |
tgaataccccattgatatgatagtaataagcttctagtatgtcaaatttagtaggggtttgaaaacttatgttgttcatgctagcagataaaatggttcc |
312 |
Q |
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| T |
46790020 |
tgaataccccgttgatatgatagtaataggcttctaatatgtcaaatttattaggggtttgaaaacttatgttgttcatgctagatgataaaatggttcc |
46790119 |
T |
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| Q |
313 |
atttgggccttcacagg |
329 |
Q |
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| T |
46790120 |
atttgggccttcacagg |
46790136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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