View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5996_low_9 (Length: 324)
Name: NF5996_low_9
Description: NF5996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5996_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 41705132 - 41705437
Alignment:
| Q |
14 |
atcatcacacaccactccatctacaaattcaaaaactcttctcctctctctgtattcaagttccaacacnnnnnnnncaaatac--tgtttaaccaaatg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| |
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| T |
41705132 |
atcatcacacaccactccatctacaaattcaaaaactcttctcctctct--gtattcaagttccaacacaaaaaaa-caaataccctgtttaaccaaatg |
41705228 |
T |
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| Q |
112 |
gcttctcccctgttatttctcctcatcatcacactcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccataatag |
211 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41705229 |
gcttctcccctgttatttctcctcctcatcacactcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccatgatag |
41705328 |
T |
|
| Q |
212 |
aattcaacacaacccaccacctccttaaatccacctcaactcactcattatcacgcttccaccgccataaacaccaccaccacaaccaactctctctccc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41705329 |
aattcaacacaacccaccacctccttaaatccacctcaactcactcattatcacgcttccaccgccataaacaccaccaccacaaccaactctctctccc |
41705428 |
T |
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| Q |
312 |
actctcacc |
320 |
Q |
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||||||||| |
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| T |
41705429 |
actctcacc |
41705437 |
T |
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