View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5997_high_1 (Length: 675)

Name: NF5997_high_1
Description: NF5997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5997_high_1
NF5997_high_1
[»] chr7 (1 HSPs)
chr7 (20-667)||(33503042-33503683)


Alignment Details
Target: chr7 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 20 - 667
Target Start/End: Original strand, 33503042 - 33503683
Alignment:
Q  20 aaagaaatatataaacttattatcaacgattgaacattacaaaattattatggaggcatgtatcatgcagttagcctagctaggtagggaagggaataaa 119  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33503042 aaagaaatataaaaacttattatcaacgattgaacattacaaaattattatggaggcatgtatcatgcagttagcctagctaggtagggaagggagtaaa 33503141  T
Q  120 gccatatatatcttcctgcaggaagattggcctcaacccgaagttatatatcaatacatattaatgtattaattttttgaactccagaaaattatcttta 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  33503142 gccatatatatcttcctgcaggaagattggcctcaacccgaagttatatatcaatacatatcaatgtattaactttttgaactccagaaaattatcttta 33503241  T
Q  220 atcagatcaaagcattacttgtccatttctttcaggaacatgtcgtatgctggaaaatgtagtcggaggcctgttggtgctgttaaagattcaaaagtga 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33503242 atcagatcaaagcattacttgtccatttctttcaggaacatgtcgtatgctggaaaatgtagtcggaggcctgttggtgctgttaaagattcaaaagtga 33503341  T
Q  320 accttccattcgcaacatctgctactaatggaactaatgatcccaaccatacaaatgcatcctctccaacagttggctcattagtaacctggtgagataa 419  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33503342 accttccattcgctacatctgctactaatggaactaatgatcccaaccatacaaatgcatcctctccaacagttggctcattagtaacctggtgagataa 33503441  T
Q  420 tttatgcaatatgattagaaagcaagttgtacaaagtaagagtaagtaaccagttacactttggacctaaaatcataaatattcaatttcaatgtacctg 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||| ||    
T  33503442 tttatgcaatatgattagaaagcaagttgtacaaagtaagagtaagtaaccagttacactttggacctaaaatcataaata------ttcaatgtacttg 33503535  T
Q  520 tatcaatctggcttggtttcaaaatttaaaaaatgaagaagaaaatgttcttacaaggaggggcatgatgtctgaataaaaaagagggatatcatcctgt 619  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33503536 tatcaatctggcttggtttcaaatttttaaaaatgaagaagaaaatgttcttacaaggaggggcatgatgtctgaataaaaaagagggatatcatcctgt 33503635  T
Q  620 tcttgagtggtttttgcagttaacttcttttcttctttctcctttgct 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33503636 tcttgagtggtttttgcagttaacttcttttcttctttctcctttgct 33503683  T

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