View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5997_high_13 (Length: 240)
Name: NF5997_high_13
Description: NF5997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5997_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 15768523 - 15768739
Alignment:
| Q |
1 |
gttggcaactcggaacctagaagacggagaaaatccaagattatctgatcccaaacctcctgaagaattctcaacaatgcggcttttctcttccttggca |
100 |
Q |
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| T |
15768523 |
gttggcaactcggaacctagaagacggagaaaatccaagattatctgatcccaaacctcctgaagaattctcaacaatgcggcttttctcttccttggca |
15768622 |
T |
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| Q |
101 |
caagcagtcaatcttctccttttaataggaacaactgtattattagagtcacctgatcttactctccgattgaactgatgctttatggtcctcttcagtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15768623 |
caagcagtcaatcttctccttttaataggaacaactgtattattagagtcacctgatcttactctccgattgaactgatgctttatgatcctcttcagtc |
15768722 |
T |
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| Q |
201 |
gattatcatcaaactca |
217 |
Q |
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| T |
15768723 |
gattatcatcaaactca |
15768739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 46651310 - 46651507
Alignment:
| Q |
17 |
ctagaagacggagaaaatccaagattatctgatcccaaacctcctgaagaattctcaacaatgcggcttttctcttccttggcacaagcagtcaatcttc |
116 |
Q |
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| T |
46651310 |
ctagaagactgagagaatcttagtttgtctgatcccaaacctcctgaagaattctcagttatgcagcttttctctgccttggcacaagcagtcaatcttc |
46651409 |
T |
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| Q |
117 |
tccttttaataggaacaactgtattattagagtcacctgatcttactctccgattgaactgatgctttatggtcctcttcagtcgattatcatcaaac |
214 |
Q |
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| T |
46651410 |
tccttttaataggaacaactgcatgattagaatcacctgatcgtactctccaattgaattgatgcttttttatcctcttcagtcgattatcatcaaac |
46651507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 46173340 - 46173522
Alignment:
| Q |
1 |
gttggcaactcggaacctagaagacggagaaaatccaagattatctgatcccaaacctcctgaagaattctcaacaatgcggcttttctcttccttggca |
100 |
Q |
| |
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| T |
46173340 |
gttggcaactcgaaagctagaagatcgagaaattcgtagtttatctgatcccagacctcctgaagaattctcaatgatgcagcttttctcttccttggca |
46173439 |
T |
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| Q |
101 |
caagcagtcaatcttctccttttaataggaacaactgtattattagagtcacctgatcttactctccgattgaactgatgctt |
183 |
Q |
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| T |
46173440 |
caatcagtcaatctcctccttttaataggaacaactgcatgatcagagtcacctgatcttactccccgattggactgatgctt |
46173522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 46642178 - 46642375
Alignment:
| Q |
17 |
ctagaagacggagaaaatccaagattatctgatcccaaacctcctgaagaattctcaacaatgcggcttttctcttccttggcacaagcagtcaatcttc |
116 |
Q |
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| T |
46642178 |
ctagaagaatgagagaatcccagtttatccgatcccaaacctactgaagaattctcagtgatgtggcttttttctgccttgacacaagcagttaatctcc |
46642277 |
T |
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| Q |
117 |
tccttttaataggaacaactgtattattagagtcacctgatcttactctccgattgaactgatgctttatggtcctcttcagtcgattatcatcaaac |
214 |
Q |
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| T |
46642278 |
tccttttaataggaacagctgcatgattagaatcaccggatattactctctgattgaattcatgttttatgatcctcttcattcgattatcaccaaac |
46642375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 53 - 204
Target Start/End: Complemental strand, 46619868 - 46619717
Alignment:
| Q |
53 |
aaacctcctgaagaattctcaacaatgcggcttttctcttccttggcacaagcagtcaatcttctccttttaataggaacaactgtattattagagtcac |
152 |
Q |
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|||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||| | |||| |||||||||||| ||| || |||||| |||| |
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| T |
46619868 |
aaacatcctgaagaattctcaacaatgcgacttttctctgatttggcacaagcagtcaatttcctccgtttaataggaacggctgcatgattagaatcac |
46619769 |
T |
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| Q |
153 |
ctgatcttactctccgattgaactgatgctttatggtcctcttcagtcgatt |
204 |
Q |
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| T |
46619768 |
cagatcttactctccgattgaattgatgttttatgatcctcgtcaatcgatt |
46619717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 53 - 212
Target Start/End: Complemental strand, 46638586 - 46638427
Alignment:
| Q |
53 |
aaacctcctgaagaattctcaacaatgcggcttttctcttccttggcacaagcagtcaatcttctccttttaataggaacaactgtattattagagtcac |
152 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||| | |||| |||||||||||| ||| || |||||| |||| |
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| T |
46638586 |
aaacatcctgaagaattctcaacaatgcggcttttctctgatttgacacaagcagtcaatttcctccgtttaataggaacggctgcatgattagaatcac |
46638487 |
T |
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| Q |
153 |
ctgatcttactctccgattgaactgatgctttatggtcctcttcagtcgattatcatcaa |
212 |
Q |
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|||| ||||||||| ||||||| ||||| |||||| ||||| ||| |||||||| ||||| |
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| T |
46638486 |
ctgaccttactctctgattgaattgatgttttatgatcctcgtcaatcgattattatcaa |
46638427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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