View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5997_high_16 (Length: 209)
Name: NF5997_high_16
Description: NF5997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5997_high_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 34218221 - 34218374
Alignment:
| Q |
14 |
gtatcaaagggcgatcctttatataataattataatgtctattataatagtgatctcttgcaaattttcagggatcaagaatcaagggaaacaaatctca |
113 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34218221 |
gtatcgaagggtgatcctttatataataattataatgtctattataatagtgatctcttgcaaattttcagggatcaagaatcaagggaaacaaatctca |
34218320 |
T |
|
| Q |
114 |
tttaaatctcatctgtctatgctctttgtgtttccaccttctcagcttatttta |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34218321 |
tttaaatctcatctgtctatgctctttgtgtttccaccttctcagcttatttta |
34218374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 2682511 - 2682406
Alignment:
| Q |
14 |
gtatcaaagggcgatcctttatataataattataatgtctattataatagtgatctcttgcaaattttcagggatcaagaatcaagggaaacaaatctca |
113 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2682511 |
gtatcgaagggtgatcctttatataataattataatgtctattataatagtgatctcttgcaaattttcagggatcaagaatcaagggaaacaaatctca |
2682412 |
T |
|
| Q |
114 |
tttaaa |
119 |
Q |
| |
|
|||||| |
|
|
| T |
2682411 |
tttaaa |
2682406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 2681862 - 2681792
Alignment:
| Q |
121 |
ctcatctgtctatgctctttgtgtttccaccttctcagcttattttannnnnnncagcacatcatggaagaag |
193 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2681862 |
ctcatctgtctatgctct--gtgtttccaccatctcagcttattttatttttttcagcacatcatggaagaag |
2681792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 5480800 - 5480905
Alignment:
| Q |
14 |
gtatcaaagggcgatcctttatataataattataatgtctattataatagtgatctcttgcaaattttcagggatcaagaatcaagggaaacaaatctca |
113 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5480800 |
gtatcgaagggtgatcctttatataataattataatgtctattataatagtgatctcttgcaaattttcagggatcaagaatcaagggaaacaaatctca |
5480899 |
T |
|
| Q |
114 |
tttaaa |
119 |
Q |
| |
|
|||||| |
|
|
| T |
5480900 |
tttaaa |
5480905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 5481449 - 5481519
Alignment:
| Q |
121 |
ctcatctgtctatgctctttgtgtttccaccttctcagcttattttannnnnnncagcacatcatggaagaag |
193 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5481449 |
ctcatctgtctatgctct--gtgtttccaccatctcagcttattttatttttttcagcacatcatggaagaag |
5481519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 45005937 - 45005832
Alignment:
| Q |
14 |
gtatcaaagggcgatcctttatataataattataatgtctattataatagtgatctcttgcaaattttcagggatcaagaatcaagggaaacaaatctca |
113 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45005937 |
gtatcgaagggtgatcctttatataataattataatgtctattataatagtgatctcttgcaaattttcagggatcaagaatcaagggaaacaaatctca |
45005838 |
T |
|
| Q |
114 |
tttaaa |
119 |
Q |
| |
|
|||||| |
|
|
| T |
45005837 |
tttaaa |
45005832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 45005288 - 45005218
Alignment:
| Q |
121 |
ctcatctgtctatgctctttgtgtttccaccttctcagcttattttannnnnnncagcacatcatggaagaag |
193 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45005288 |
ctcatctgtctatgctct--gtgtttccaccatctcagcttattttatttttttcagcacatcatggaagaag |
45005218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 27147344 - 27147440
Alignment:
| Q |
20 |
aagggcgatcctttatataataattataatgtctattat-------aatagtgatctcttgcaaattttcagggatcaagaatcaagggaaacaaat |
109 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27147344 |
aagggtgatcttttatataataattataatgtctatttttacattaaatagtgatcaattgcaaattttcagggatcaagaatcaagggaaacaaat |
27147440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University