View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5997_high_3 (Length: 419)
Name: NF5997_high_3
Description: NF5997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5997_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Complemental strand, 12532379 - 12531987
Alignment:
| Q |
19 |
cattccaccagaattaagcaacatgtgaagaaattaagcaattaagcaacatgtgaagaaaatacacaaaaacaaacaatgaagcaaagttttggacaca |
118 |
Q |
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| T |
12532379 |
cattccaccagaattaagcaacatgtgaagaaattaagcaattaagcaacatgtgaagaaaatacacaaaaacaaacaatgaagcaaagttttggagaca |
12532280 |
T |
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| Q |
119 |
atttaattcataaagcagaggacagcatacaccacacaaattaggcacatccttgatggacaaggccaaactatttt--cccatctatgaagcaacgaca |
216 |
Q |
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| T |
12532279 |
atttaattcataaagcagaggacagcatacaccacacaaattaggcacatccttgatggacaaggccaaactattttttcccatctacgaagcaacgaca |
12532180 |
T |
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| Q |
217 |
cacacaaaactaacacataaacccccataataattaaacgatagaagtgttttaatgtatgtagcaacacatgttaatctcatacaagtgcagacatgag |
316 |
Q |
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| T |
12532179 |
cacacaaaactaacacataaacccccataataattaaacgatagaagtgttttaatgtatgtagcaacacatgttaatctcatacaagtgcagacatgag |
12532080 |
T |
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| Q |
317 |
ttatcaccaagatatgtcaggcataccttcaatttgaataatcaaagcgtcccaattagtattacatcaatttcaattattttcatgatgatg |
409 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
12532079 |
ttatcaccaagatatgtcaagcataccttcaatttgaataatcaaagcatccctattagtattacatcaatttcaattattttcatgaagatg |
12531987 |
T |
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