View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5997_high_8 (Length: 275)

Name: NF5997_high_8
Description: NF5997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5997_high_8
NF5997_high_8
[»] chr1 (5 HSPs)
chr1 (9-161)||(11438264-11438409)
chr1 (218-268)||(11435983-11436033)
chr1 (157-210)||(11437311-11437365)
chr1 (135-236)||(28736218-28736319)
chr1 (10-52)||(11428772-11428814)
[»] chr4 (1 HSPs)
chr4 (179-239)||(3535170-3535230)
[»] chr5 (1 HSPs)
chr5 (179-207)||(29226105-29226133)
[»] chr3 (1 HSPs)
chr3 (182-239)||(37083852-37083909)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 11438409 - 11438264
Alignment:
Q  9 aaagtttacttcatctttcatttagtgcactgtgcacacttagtcacttaaagtaatttttattatattagggtctctttgacaagacattattttgagc 108  Q
    ||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||    
T  11438409 aaagtttacttcaactttcatttagtgcatagtgcacacttagtcacttaaagtaatttttattatattagggtctgtttcacaagacatcattttgagc 11438310  T
Q  109 ttatagcttataatttatgtcttaaaatttgactagaaaagatctatctgtta 161  Q
    |       ||||| ||||||||||||||||||||| ||||||||||| |||||    
T  11438309 t-------tataacttatgtcttaaaatttgactaaaaaagatctatttgtta 11438264  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 11436033 - 11435983
Alignment:
Q  218 ataagctaatccaagtagcttaaaacttatagtttatcgttattcatctca 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11436033 ataagctaatccaagtagcttaaaacttatagtttatcgttattcatctca 11435983  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 11437365 - 11437311
Alignment:
Q  157 tgttaaccatcatttttt-cataagtttatagcttatttttactaacttatagca 210  Q
    |||||||||||||||||| |||||  |||||||||||||||||||||||||||||    
T  11437365 tgttaaccatcatttttttcataaacttatagcttatttttactaacttatagca 11437311  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 28736319 - 28736218
Alignment:
Q  135 atttgactagaaaagatctatctgttaaccatcattttttcataagtttatagcttatttttactaacttatagcannnnnnnataagctaatccaagta 234  Q
    ||||||||| |||||| |   ||| ||||| ||||||||||| ||| ||| ||||||||||||| |||||||||||       |||||||||| ||||||    
T  28736319 atttgactaaaaaagaccagcctggtaaccgtcattttttcacaagcttacagcttatttttaccaacttatagcatttttagataagctaattcaagta 28736220  T
Q  235 gc 236  Q
    ||    
T  28736219 gc 28736218  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 11428814 - 11428772
Alignment:
Q  10 aagtttacttcatctttcatttagtgcactgtgcacacttagt 52  Q
    |||||||||||| |||||||||| |||||||||||| ||||||    
T  11428814 aagtttacttcaactttcatttaatgcactgtgcacgcttagt 11428772  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 3535170 - 3535230
Alignment:
Q  179 agtttatagcttatttttactaacttatagcannnnnnnataagctaatccaagtagctta 239  Q
    |||||||||||||||||||||||||||||||        |||||||||| |||||||||||    
T  3535170 agtttatagcttatttttactaacttatagcgttttttgataagctaattcaagtagctta 3535230  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 207
Target Start/End: Complemental strand, 29226133 - 29226105
Alignment:
Q  179 agtttatagcttatttttactaacttata 207  Q
    |||||||||||||||||||||||||||||    
T  29226133 agtttatagcttatttttactaacttata 29226105  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 37083852 - 37083909
Alignment:
Q  182 ttatagcttatttttactaacttatagcannnnnnnataagctaatccaagtagctta 239  Q
    ||||||||||||||||||| |||||||||       |||||||||| |||||||||||    
T  37083852 ttatagcttatttttactagcttatagcaatttttaataagctaattcaagtagctta 37083909  T

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