View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5997_low_11 (Length: 254)

Name: NF5997_low_11
Description: NF5997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5997_low_11
NF5997_low_11
[»] chr4 (8 HSPs)
chr4 (1-243)||(52189227-52189469)
chr4 (1-87)||(52190303-52190389)
chr4 (1-87)||(30829968-30830054)
chr4 (101-217)||(31410362-31410481)
chr4 (5-87)||(31409358-31409437)
chr4 (1-85)||(8480884-8480968)
chr4 (12-102)||(31410531-31410619)
chr4 (32-86)||(53226752-53226806)
[»] chr8 (5 HSPs)
chr8 (1-243)||(17863507-17863748)
chr8 (1-87)||(17864649-17864735)
chr8 (10-88)||(32565567-32565645)
chr8 (1-83)||(3870809-3870891)
chr8 (1-83)||(3872224-3872306)
[»] chr1 (6 HSPs)
chr1 (5-217)||(35062609-35062833)
chr1 (5-88)||(36574007-36574090)
chr1 (1-87)||(35063556-35063642)
chr1 (1-88)||(26529549-26529636)
chr1 (144-217)||(26280890-26280963)
chr1 (6-88)||(49917434-49917516)
[»] chr7 (4 HSPs)
chr7 (10-217)||(41740820-41741037)
chr7 (1-87)||(41739663-41739749)
chr7 (7-100)||(42537763-42537855)
chr7 (33-86)||(25272077-25272130)
[»] chr5 (5 HSPs)
chr5 (1-217)||(35967389-35967617)
chr5 (1-87)||(38921496-38921582)
chr5 (1-88)||(16727853-16727940)
chr5 (16-87)||(35968630-35968701)
chr5 (12-87)||(16306747-16306822)
[»] chr3 (6 HSPs)
chr3 (101-217)||(19810518-19810638)
chr3 (32-87)||(36163455-36163510)
chr3 (6-84)||(20997679-20997757)
chr3 (6-86)||(9099606-9099686)
chr3 (32-88)||(20884298-20884354)
chr3 (7-100)||(37464910-37465002)
[»] chr2 (4 HSPs)
chr2 (1-88)||(36669088-36669175)
chr2 (10-87)||(4753578-4753655)
chr2 (5-88)||(31622038-31622121)
chr2 (10-85)||(40894807-40894882)
[»] chr6 (4 HSPs)
chr6 (32-87)||(18191818-18191873)
chr6 (32-87)||(30758806-30758861)
chr6 (33-87)||(21396367-21396421)
chr6 (32-83)||(31855723-31855774)
[»] scaffold0115 (2 HSPs)
scaffold0115 (1-83)||(4377-4459)
scaffold0115 (1-83)||(12117-12199)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 52189227 - 52189469
Alignment:
Q  1 tcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttgaacgttaagtgtg 100  Q
    |||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52189227 tcagccacatccctggatcaattaaacaaatcaaaaactcgctcaatgtatgttccgttagtcaaatgcatccaaaacgttaacttgaacgttaagtgtg 52189326  T
Q  101 attggagagggacctgaatgaatgtaatccctccatcttctggaaaaaattaacaagttcatatcttcatcttccttcataccctccatctcaaaacatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52189327 attggagagggacctgaatgaatgtaatccctccatcttctgaaaaaaattaacaagttcatatcttcatcttccttcataccctccatctcaaaacatt 52189426  T
Q  201 ccaaaagacaaaaataagttatttaaaatcattatctctgctc 243  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  52189427 ccaaaagacaaaaataagttctttacaatcattatctctgctc 52189469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 52190389 - 52190303
Alignment:
Q  1 tcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 87  Q
    ||||||| |||| |||||||||||||| ||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||    
T  52190389 tcagccagatccatggatcaattaaacgaaccaaaaactcccccaatgtctgttttgttagtcaaatgcatccaaaacgttaacttg 52190303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 30829968 - 30830054
Alignment:
Q  1 tcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 87  Q
    |||| ||||||||| ||||||| |||| ||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  30829968 tcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttg 30830054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 31410481 - 31410362
Alignment:
Q  101 attggagagggacctgaatgaatgtaat---ccctccatcttctggaaaaaattaacaagttcatatcttcatcttccttcataccctccatctcaaaac 197  Q
    |||||||||||||  ||||||| |||||   || ||||||||||| | ||||||  |||| ||||| |||||||||| |||||||||||| |||||||||    
T  31410481 attggagagggacgagaatgaacgtaatatcccttccatcttctgtagaaaatttgcaagctcataacttcatcttctttcataccctccctctcaaaac 31410382  T
Q  198 attccaaaagacaaaaataa 217  Q
    ||||||| ||||||||||||    
T  31410381 attccaagagacaaaaataa 31410362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 31409358 - 31409437
Alignment:
Q  5 ccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 87  Q
    |||| ||| |||||||| ||||| |||||||||||||| ||   | |||||||||||||||||||||||||||||||||||||    
T  31409358 ccacgtccttggatcaaataaacgaaccaaaaactccctca---tctgttccgttagtcaaatgcatccaaaacgttaacttg 31409437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 8480968 - 8480884
Alignment:
Q  1 tcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaact 85  Q
    |||| ||| ||||||||||||| ||||  ||||||||||||||||| || | ||||||||||||    |||||||||||||||||    
T  8480968 tcagtcacgtccctggatcaatgaaacgcaccaaaaactcccccaaagtctcttccgttagtcattcccatccaaaacgttaact 8480884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 31410619 - 31410531
Alignment:
Q  12 cctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttgaacgttaagtgtgat 102  Q
    |||| ||||||||||| || |||||||||| | ||| | |||||||||||||| |  | |||||||||||||| |||||||||||||||||    
T  31410619 cctgaatcaattaaacgaatcaaaaactcctc-aatatctgttccgttagtcacacacgtccaaaacgttaac-tgaacgttaagtgtgat 31410531  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 53226752 - 53226806
Alignment:
Q  32 caaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaactt 86  Q
    |||||||||| |||||||||||||   ||||||||||||||  ||||||||||||    
T  53226752 caaaaactcctccaatgtatgttctaatagtcaaatgcatctgaaacgttaactt 53226806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 17863507 - 17863748
Alignment:
Q  1 tcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttgaacgttaagtgtg 100  Q
    |||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  17863507 tcagccacatccttggatcaattaaataaaccaaaaactcctccaatgtatgttccgtcagtcaaatgcatccaaaacgttaact-gaacgttaagtgtg 17863605  T
Q  101 attggagagggacctgaatgaatgtaatccctccatcttctggaaaaaattaacaagttcatatcttcatcttccttcataccctccatctcaaaacatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  17863606 attggagagggacctgaatgaatgtaatccctccatcttctagaaaaaattaacaagttcatatttttatcttccttcataccctccatctcaaaacatt 17863705  T
Q  201 ccaaaagacaaaaataagttatttaaaatcattatctctgctc 243  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  17863706 ccaaaagacaaaaataagttctttacaatcattatctctgctc 17863748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 17864735 - 17864649
Alignment:
Q  1 tcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 87  Q
    ||||||||||||| ||||||| ||||| |||||| ||||||| |||||| | ||  |||||||||||||||||||||| ||||||||    
T  17864735 tcagccacatccccggatcaaataaacgaaccaagaactccctcaatgtctattttgttagtcaaatgcatccaaaacattaacttg 17864649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 32565645 - 32565567
Alignment:
Q  10 tccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttga 88  Q
    ||||| |||||||| ||  || ||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||    
T  32565645 tccctcgatcaatttaatgaatcaaaaactcccccaatgtacgttatgttagtcaaatgcatccaaaacgttaacttga 32565567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 3870809 - 3870891
Alignment:
Q  1 tcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaa 83  Q
    |||||||| ||||| |||||||||| | || ||||||||||||||||   ||||||||||||||| | | |||||||||||||    
T  3870809 tcagccacgtccctagatcaattaagcgaatcaaaaactcccccaatagttgttccgttagtcaatttcgtccaaaacgttaa 3870891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 3872306 - 3872224
Alignment:
Q  1 tcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaa 83  Q
    |||||||| |||||| ||||||||||| |||||||||||| | |||||  | ||||||||||||| | | |||||||||||||    
T  3872306 tcagccacgtccctgtatcaattaaacgaaccaaaaactctctcaatggttattccgttagtcaatttcgtccaaaacgttaa 3872224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 35062609 - 35062833
Alignment:
Q  5 ccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttgaacgttaagtgtgat-- 102  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||    | |||||||| |||| ||||||||||||||||||      
T  35062609 ccacatccctgaatcaattaaactaaccaaaaactcccccaatgtttgttccgttagtcatccacgtccaaaacattaa-ttgaacgttaagtgtgatga 35062707  T
Q  103 ---------tggagagggacctgaatgaatgtaat--ccctccatcttctggaaaaaattaacaagttcatatcttcatcttccttcataccctccatct 191  Q
             ||||||||||| ||||||||||||||  ||||| || ||||||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  35062708 tgtgttcattggagagggacgtgaatgaatgtaatatccctcaattttctggaaaaaattaacaagttcatatattcatcttcctcaataccctccatct 35062807  T
Q  192 caaaacattccaaaagacaaaaataa 217  Q
    ||||||||||||||||||||||||||    
T  35062808 caaaacattccaaaagacaaaaataa 35062833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 36574007 - 36574090
Alignment:
Q  5 ccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttga 88  Q
    |||| |||||| |||||  |||| ||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  36574007 ccacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttccgttagtcaaatgcatccaaaacgttaacttga 36574090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 35063642 - 35063556
Alignment:
Q  1 tcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 87  Q
    |||| |||||| || ||||||| |||| |||||||||||||||||||   |||| ||||||||||||||||||||||||||||||||    
T  35063642 tcaggcacatctctagatcaatgaaacgaaccaaaaactcccccaattattgtttcgttagtcaaatgcatccaaaacgttaacttg 35063556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 26529549 - 26529636
Alignment:
Q  1 tcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttga 88  Q
    |||| ||| |||||| |||||  |||| ||| |||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||    
T  26529549 tcagacacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtttgttctgttagtcaaatgcatccaaaacgttaacttga 26529636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 26280963 - 26280890
Alignment:
Q  144 aaaaaattaacaagttcatatcttcatcttccttcataccct-ccatctcaaaacattccaaaagacaaaaataa 217  Q
    |||||||||||||| |||||||||||| ||||| |||||||| ||  ||||||||||| ||| ||||||||||||    
T  26280963 aaaaaattaacaagctcatatcttcatattcctccataccctcccccctcaaaacatt-caagagacaaaaataa 26280890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 49917434 - 49917516
Alignment:
Q  6 cacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttga 88  Q
    ||||||| |||||||||| ||  ||| ||||||||||  | ||| || || ||||||||||||||||||||| ||||||||||    
T  49917434 cacatccttggatcaatttaatgaactaaaaactcccgtattgtttgatctgttagtcaaatgcatccaaaatgttaacttga 49917516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 41741037 - 41740820
Alignment:
Q  10 tccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttgaacgttaagtgtgat------- 102  Q
    |||| ||||||||||||| ||||||||||||||||||| | ||||||||||||||    | ||||||||||||||| |  |||||||||||||           
T  41741037 tccccggatcaattaaactaaccaaaaactcccccaatatttgttccgttagtcatccacgtccaaaacgttaactggc-cgttaagtgtgatgatgtgt 41740939  T
Q  103 ----tggagagggacctgaatgaatgtaat--ccctccatcttctggaaaaaattaacaagttcatatcttcatcttccttcataccctccatctcaaaa 196  Q
        || |||||||  ||||||||||||||  ||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41740938 caattgaagagggatgtgaatgaatgtaatatccctcaattttctggaaaaaattaacaagttcatatattcatcttccttcataccctccatctcaaaa 41740839  T
Q  197 cattccaaaagacaaaaataa 217  Q
    ||||||  |||||||||||||    
T  41740838 cattcc--aagacaaaaataa 41740820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 41739663 - 41739749
Alignment:
Q  1 tcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 87  Q
    |||| ||||||||| ||||||| |||| ||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  41739663 tcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttg 41739749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 42537763 - 42537855
Alignment:
Q  7 acatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttgaacgttaagtgtg 100  Q
    ||||||||| |||||| |||| ||||||||||||||| ||||| | ||||||| ||||    | ||||||||||||| ||||||||||| ||||    
T  42537763 acatccctgaatcaatgaaacgaaccaaaaactccccgaatgtctcttccgtttgtcattcacgtccaaaacgttaa-ttgaacgttaattgtg 42537855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 25272130 - 25272077
Alignment:
Q  33 aaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaactt 86  Q
    ||||| |||| ||||||||||   ||||||||||||||| ||||||||||||||    
T  25272130 aaaaattccctcaatgtatgtaaagttagtcaaatgcattcaaaacgttaactt 25272077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 35967389 - 35967617
Alignment:
Q  1 tcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttgaacgttaagtgtg 100  Q
    ||||||||||||  | ||||||||||| ||||||||||||||||||||| |||||||||||||||   | |||||||| |||||  |  | |||||||||    
T  35967389 tcagccacatcctcgaatcaattaaactaaccaaaaactcccccaatgtttgttccgttagtcaaccacgtccaaaacattaacgggccc-ttaagtgtg 35967487  T
Q  101 at-----------tggagagggacctgaatgaatgtaat--ccctccatcttctggaaaaaattaacaagttcatatcttcatcttccttcataccctcc 187  Q
    ||           |||||||||   ||||||||||||||  ||||| || ||| ||||||||||||||||||||||| ||||||||| ||||||||||||    
T  35967488 atgatgtgtcaattggagaggggtgtgaatgaatgtaatatccctcaattttcgggaaaaaattaacaagttcatatattcatcttcattcataccctcc 35967587  T
Q  188 atctcaaaacattccaaaagacaaaaataa 217  Q
    ||||||||||||||||||||||||||||||    
T  35967588 atctcaaaacattccaaaagacaaaaataa 35967617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 38921496 - 38921582
Alignment:
Q  1 tcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 87  Q
    |||| ||||||||| ||||||| |||  ||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  38921496 tcaggcacatccctagatcaatgaaatgaaccaaaaactcccccaatgattgtttcgttagtcaaatgcatccaaaacgttaacttg 38921582  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 16727853 - 16727940
Alignment:
Q  1 tcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttga 88  Q
    |||||||| | |||| |||||  |||| ||| ||||||| || |||||| |||||||||||||||||||||||||||| |||||||||    
T  16727853 tcagccacgttcctgaatcaagaaaacgaactaaaaacttcctcaatgtctgttccgttagtcaaatgcatccaaaacattaacttga 16727940  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 35968701 - 35968630
Alignment:
Q  16 gatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 87  Q
    ||||||| |||| |||||||||||||||||||   ||||  |||||||||||||||||||||||||||||||    
T  35968701 gatcaatgaaacgaaccaaaaactcccccaattattgttttgttagtcaaatgcatccaaaacgttaacttg 35968630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 16306822 - 16306747
Alignment:
Q  12 cctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 87  Q
    |||||||||||| ||  || |||||||| ||  ||||||||||  |||||||||||||||| ||||||||||||||    
T  16306822 cctggatcaatttaatgaatcaaaaacttccttaatgtatgttatgttagtcaaatgcatctaaaacgttaacttg 16306747  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 19810638 - 19810518
Alignment:
Q  101 attggagagggacctgaatgaatgtaat---ccctccatcttctggaaaaaa-ttaacaagttcatatcttcatcttccttcataccctccatctcaaaa 196  Q
    ||||||||||||   |||||||||||||   || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  19810638 attggagagggataagaatgaatgtaatatcccttccatcttctggaaaaaaattaacaagttcatatcttcatcttccttcataccctccctctcaaaa 19810539  T
Q  197 cattccaaaagacaaaaataa 217  Q
    |||||||| ||||||||||||    
T  19810538 cattccaagagacaaaaataa 19810518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 36163455 - 36163510
Alignment:
Q  32 caaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 87  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||||||||||||    
T  36163455 caaaaactcccccaatgtacgttatgttagtcaaatgcatccaaaacgttaacttg 36163510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 20997679 - 20997757
Alignment:
Q  6 cacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaac 84  Q
    |||||||| |||||||| ||||||||||||||||||  ||||||  ||| ||||||||||||   ||||||||||||||    
T  20997679 cacatcccaggatcaataaaacaaaccaaaaactccttcaatgttggtttcgttagtcaaataagtccaaaacgttaac 20997757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 9099606 - 9099686
Alignment:
Q  6 cacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaactt 86  Q
    |||||||||| |||||| |||| ||||||||||||   ||||||  ||||||||||||||||   ||||||||||||||||    
T  9099606 cacatccctgaatcaatgaaacgaaccaaaaactctttcaatgttggttccgttagtcaaataagtccaaaacgttaactt 9099686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 20884298 - 20884354
Alignment:
Q  32 caaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttga 88  Q
    |||||||||| |||||  ||||||  |||||||||||||||||||||||||||||||    
T  20884298 caaaaactcctccaatacatgttctcttagtcaaatgcatccaaaacgttaacttga 20884354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 37465002 - 37464910
Alignment:
Q  7 acatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttgaacgttaagtgtg 100  Q
    |||||||| ||||||| |||||||||||||||||||  ||||| | ||||||| ||||    | |||||||||||||| |||||||||| ||||    
T  37465002 acatccctagatcaatgaaacaaaccaaaaactccctgaatgtctcttccgtttgtcattcacgtccaaaacgttaac-tgaacgttaattgtg 37464910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 36669175 - 36669088
Alignment:
Q  1 tcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttga 88  Q
    |||||||| |||||| |||||  |||||||| |||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||    
T  36669175 tcagccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtctgttctgttagtcaaatgcatccaaaacgttaacttga 36669088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 4753578 - 4753655
Alignment:
Q  10 tccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 87  Q
    |||||||||||||||||  || ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||    
T  4753578 tccctggatcaattaaatgaatcaaaaactccctcaatgtatgttttgttagtcaaatgcatccaaaacgttaacttg 4753655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 31622121 - 31622038
Alignment:
Q  5 ccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttga 88  Q
    |||| |||||| |||||  |||||||| |||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||    
T  31622121 ccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtttgttccgtttgtcaaatgcatccaaaacgttaacttga 31622038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 40894882 - 40894807
Alignment:
Q  10 tccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaact 85  Q
    ||||||||||||| |||| ||| ||||||||||||||||| | ||||||||||||    | |||||||||||||||    
T  40894882 tccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttagtcattcacgtccaaaacgttaact 40894807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 18191818 - 18191873
Alignment:
Q  32 caaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 87  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  18191818 caaaaactcccccaatgtatgttatgttagtcaaatgcatccaaaacgttaacttg 18191873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 30758861 - 30758806
Alignment:
Q  32 caaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 87  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||| ||||||||    
T  30758861 caaaaactccctcaatgtatgttttgttagtcaaatgcatccaaaacattaacttg 30758806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 21396367 - 21396421
Alignment:
Q  33 aaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaacttg 87  Q
    ||||||||| |||||||||||||  |||||||||| ||||||||||| |||||||    
T  21396367 aaaaactcctccaatgtatgttcttttagtcaaatacatccaaaacgctaacttg 21396421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 31855723 - 31855774
Alignment:
Q  32 caaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaa 83  Q
    |||||||||||| ||||||||||  |||||||||||| ||||||||| ||||    
T  31855723 caaaaactcccctaatgtatgttatgttagtcaaatgtatccaaaacattaa 31855774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 4377 - 4459
Alignment:
Q  1 tcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaa 83  Q
    |||||||| ||||| ||||||| ||||  ||||||||||||||||| || | |||| |||||||    |||||||||||||||    
T  4377 tcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaaagtctcttccattagtcattcccatccaaaacgttaa 4459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 12117 - 12199
Alignment:
Q  1 tcagccacatccctggatcaattaaacaaaccaaaaactcccccaatgtatgttccgttagtcaaatgcatccaaaacgttaa 83  Q
    |||||||| ||||| ||||||| ||||  ||||||||||||||||| || | |||| |||||||    |||||||||||||||    
T  12117 tcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaaagtctcttccattagtcattcccatccaaaacgttaa 12199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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