View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5997_low_16 (Length: 220)

Name: NF5997_low_16
Description: NF5997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5997_low_16
NF5997_low_16
[»] chr7 (4 HSPs)
chr7 (112-207)||(1553167-1553261)
chr7 (119-207)||(1537584-1537677)
chr7 (65-108)||(1545570-1545613)
chr7 (63-108)||(12469043-12469088)
[»] chr3 (3 HSPs)
chr3 (22-65)||(9103216-9103259)
chr3 (63-108)||(53589050-53589096)
chr3 (63-107)||(45279860-45279904)
[»] chr5 (1 HSPs)
chr5 (26-68)||(40687379-40687421)
[»] chr4 (2 HSPs)
chr4 (63-108)||(16647168-16647213)
chr4 (63-108)||(24924987-24925032)
[»] chr8 (3 HSPs)
chr8 (63-108)||(22454653-22454698)
chr8 (63-108)||(32352298-32352343)
chr8 (63-108)||(32368959-32369004)
[»] chr6 (1 HSPs)
chr6 (63-108)||(17352817-17352862)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 1553167 - 1553261
Alignment:
Q  112 ttcaacctacctaaatttattatcttttttgagttcaatgcattttacttaatttcattgtcataatcattcataattattttatataagtataat 207  Q
    |||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1553167 ttcaacctacctgaatttattatcctttt-gagttcaatgcattttacttaatttcattgtcataatcattcataattattttatataagtgtaat 1553261  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 1537677 - 1537584
Alignment:
Q  119 tacctaaatttattatcttttttgagttcaatgcattttactta----atttcattgtcataatcattcataatta-ttttatataagtataat 207  Q
    ||||| ||||||||||  ||||||||||||||||||||||| ||    |||||||||||||||| ||||||||||| |||||||||||| ||||    
T  1537677 tacctgaatttattataatttttgagttcaatgcattttacatatacaatttcattgtcataataattcataattatttttatataagtgtaat 1537584  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 1545570 - 1545613
Alignment:
Q  65 atagtagtttttcattaggataaagggtcgcaaatcacttatag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1545570 atagtagtttttcattaggataaagggtcgcaaatcacttatag 1545613  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 12469088 - 12469043
Alignment:
Q  63 atatagtagtttttcattaggataaagggtcgcaaatcacttatag 108  Q
    ||||||||||||||||| |||| || ||||||||||||||||||||    
T  12469088 atatagtagtttttcataaggaaaatgggtcgcaaatcacttatag 12469043  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 9103216 - 9103259
Alignment:
Q  22 tccatgccctatttcttttacagcacgttaggtatgtcaagata 65  Q
    |||||||||| |||||||||||||||||| ||||||||||||||    
T  9103216 tccatgccctgtttcttttacagcacgttgggtatgtcaagata 9103259  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 53589050 - 53589096
Alignment:
Q  63 atatagtagtttttcattagg-ataaagggtcgcaaatcacttatag 108  Q
    ||||||||||||||||||||| | ||| |||||||||||||||||||    
T  53589050 atatagtagtttttcattaggaaaaaatggtcgcaaatcacttatag 53589096  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 45279860 - 45279904
Alignment:
Q  63 atatagtagtttttcattaggataaagggtcgcaaatcacttata 107  Q
    ||||||||||||||||| || | |||||||| |||||||||||||    
T  45279860 atatagtagtttttcataagaaaaaagggtcacaaatcacttata 45279904  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 40687379 - 40687421
Alignment:
Q  26 tgccctatttcttttacagcacgttaggtatgtcaagatatag 68  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  40687379 tgccctattccttttacatcacgttaggtatgtcaagatatag 40687421  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 16647213 - 16647168
Alignment:
Q  63 atatagtagtttttcattaggataaagggtcgcaaatcacttatag 108  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  16647213 atatagtagtttttcataagaaaaaagggtcgcaaatcacttatag 16647168  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 24925032 - 24924987
Alignment:
Q  63 atatagtagtttttcattaggataaagggtcgcaaatcacttatag 108  Q
    |||||||||||||||||| | | ||||| |||||||||||||||||    
T  24925032 atatagtagtttttcatttgaaaaaaggttcgcaaatcacttatag 24924987  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 22454653 - 22454698
Alignment:
Q  63 atatagtagtttttcattaggataaagggtcgcaaatcacttatag 108  Q
    ||||||||||||||||| || | || ||||||||||||||||||||    
T  22454653 atatagtagtttttcataagaaaaatgggtcgcaaatcacttatag 22454698  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 32352343 - 32352298
Alignment:
Q  63 atatagtagtttttcattaggataaagggtcgcaaatcacttatag 108  Q
    ||||||||||||||||| || | || ||||||||||||||||||||    
T  32352343 atatagtagtttttcataagaaaaacgggtcgcaaatcacttatag 32352298  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 32369004 - 32368959
Alignment:
Q  63 atatagtagtttttcattaggataaagggtcgcaaatcacttatag 108  Q
    ||||||||||||||||| || | || ||||||||||||||||||||    
T  32369004 atatagtagtttttcataagaaaaacgggtcgcaaatcacttatag 32368959  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 17352862 - 17352817
Alignment:
Q  63 atatagtagtttttcattaggataaagggtcgcaaatcacttatag 108  Q
    ||||||||||||| | | |||| |||||||||||||||||||||||    
T  17352862 atatagtagttttccctaaggaaaaagggtcgcaaatcacttatag 17352817  T

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