View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5997_low_4 (Length: 417)
Name: NF5997_low_4
Description: NF5997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5997_low_4 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 417
Target Start/End: Complemental strand, 11438908 - 11438508
Alignment:
| Q |
17 |
caattaaagtaactatcaacaaacagaattaactataaaaatcattgactactaacgaccaaaaaacaattaactaactgaatcagtctttttnnnnnnn |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || || |
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| T |
11438908 |
caattaaagtaactatcaacaaacagaattaactataaaaatcattgacttctaacgaccaaaaaacaattaactaactgaatcagttttcttaaaaaaa |
11438809 |
T |
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| Q |
117 |
nnnnnnnnnnnnctaactgaatcagtaagtaacaatcagtaaacagaattgactaagataaactcattcttgcaatacatgattgaaaaatactgttcca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11438808 |
taaaaaataaaactaactgaatcagtaagtaacaatcagtaaacagaattgactaagataaactcattcttgcaatacatgattgaaaaatactgttcca |
11438709 |
T |
|
| Q |
217 |
actgcactttttaatttacaaataaaaattatttgacatgtaattttgaaagtattcaggcttcatgtagaaatgattaattaacagaatattcannnnn |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| |||| |
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| T |
11438708 |
actgcactttttaatttacaaataaaaattatttgacatgtaattttgaaattattcaggctttatgtagaaatgattagttaacagaattttcattttt |
11438609 |
T |
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| Q |
317 |
nnnnatcactttctcatggacaatcttttcaagtttactttaactttcaacccatttaagttggcctgatggtattgacttgagatttaagagtgtgatc |
416 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||| |||||| || |||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
11438608 |
ttttatcactttctcatggacaatcttttcaagttttcttcaacttttaacccacttgagttggtctgatggtattgacttgcgatttaagagtgtgatc |
11438509 |
T |
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| Q |
417 |
c |
417 |
Q |
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| T |
11438508 |
c |
11438508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 139 - 311
Target Start/End: Complemental strand, 11424268 - 11424096
Alignment:
| Q |
139 |
cagtaagtaacaatcagtaaacagaattgactaagataaactcattcttgcaatacatgattgaaaaatactgttccaactgcactttttaatttacaaa |
238 |
Q |
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||||||| |||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| |
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| T |
11424268 |
cagtaagcaacaatcagtaaacagaatttaccaacataaactcattcttgcaatacatgattgaaaaatactgttccaactgaatttattaatttacaaa |
11424169 |
T |
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| Q |
239 |
taaaaattatttgacatgtaattttgaaagtattcaggcttcatgtagaaatgattaattaacagaatattca |
311 |
Q |
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| T |
11424168 |
taaaaatcatttgacgtgtaattttaaaagtattcatgctttttgtagaaatgtttctttaacagaattttca |
11424096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 139 - 365
Target Start/End: Complemental strand, 11429019 - 11428796
Alignment:
| Q |
139 |
cagtaagtaacaatcagtaaacagaattgactaagataaactcattcttgcaatacatgattgaaaaatactgttccaactgcactttttaatttacaaa |
238 |
Q |
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||||||| ||||||||||||||| |||| || || |||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||| |
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| T |
11429019 |
cagtaagcaacaatcagtaaacataatttaccaacataagctcattcttgcaatacatgattgaaaaatactgtttcaactgatttttttaatatacaaa |
11428920 |
T |
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| Q |
239 |
taaaaattatttgacatgtaattttgaaagtattcaggcttcatgtagaaatgattaattaacagaatattcannnnnnnnnatcactttctcatggaca |
338 |
Q |
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| T |
11428919 |
taaaaatcatttgacgtgtaattttaaaagtattcaggctttttgtagaaatgtttatttaacagaattttcaaacatttt--tcactttctcatggac- |
11428823 |
T |
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| Q |
339 |
atcttttcaagtttactttaactttca |
365 |
Q |
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||||||| |||||||||| |||||||| |
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| T |
11428822 |
atcttttgaagtttacttcaactttca |
11428796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 11429101 - 11429021
Alignment:
| Q |
17 |
caattaaagtaactatcaacaaacagaattaactataaaaatcattgactactaacgaccaaaaaacaattaactaactga |
97 |
Q |
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||||||||||||||||||||||||| |||| || | |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11429101 |
caattaaagtaactatcaacaaacataattcacaaaaaaaatcattgactactaacgaccaaaaaataattaactaactga |
11429021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 11424350 - 11424271
Alignment:
| Q |
17 |
caattaaagtaactatcaacaaacagaattaactataaaaatcattgactactaacgaccaaaaaacaattaactaactg |
96 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||| ||||||||||||| |
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| T |
11424350 |
caattaaagtaactatcagaaaacagaattaactataaaaatcattgactactaacaactggaaaataattaactaactg |
11424271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 413
Target Start/End: Original strand, 51814505 - 51814542
Alignment:
| Q |
376 |
gttggcctgatggtattgacttgagatttaagagtgtg |
413 |
Q |
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||||||||||||||||||||||||||| | |||||||| |
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| T |
51814505 |
gttggcctgatggtattgacttgagatctgagagtgtg |
51814542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 11099767 - 11099804
Alignment:
| Q |
365 |
aacccatttaagttggcctgatggtattgacttgagat |
402 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
11099767 |
aacccttttaagttggcctgatggtattgacttgagat |
11099804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 413
Target Start/End: Complemental strand, 51346523 - 51346486
Alignment:
| Q |
376 |
gttggcctgatggtattgacttgagatttaagagtgtg |
413 |
Q |
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|||||||||| |||||||||||||||||| |||||||| |
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| T |
51346523 |
gttggcctgacggtattgacttgagatttgagagtgtg |
51346486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 413
Target Start/End: Original strand, 35916097 - 35916134
Alignment:
| Q |
376 |
gttggcctgatggtattgacttgagatttaagagtgtg |
413 |
Q |
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||||| ||| |||||||||||||||||||||||||||| |
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| T |
35916097 |
gttggtctggtggtattgacttgagatttaagagtgtg |
35916134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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