View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5997_low_5 (Length: 383)
Name: NF5997_low_5
Description: NF5997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5997_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 34 - 369
Target Start/End: Complemental strand, 45802937 - 45802592
Alignment:
| Q |
34 |
tataattttcctctctctagctttgattttttctttggtgcttctacagggttattcccacaaaagatacctgtgtaataagcaaagaagagtcatagga |
133 |
Q |
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| T |
45802937 |
tataatttccctctctctagctttgattttttctttggtgcttctacggggttattcccacaaaagatacttgtgtaataagcaaagaagagtcacagga |
45802838 |
T |
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| Q |
134 |
gtttaggggttaagctaacaatattaatcccaagaataacactaacgttgttctctcaagttttgatagttaagcctnnnnnnngcttatgcacgtaaaa |
233 |
Q |
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| T |
45802837 |
gtttaggggctaagctaacaatattaatcccaagaataacactaacgttgttctcttaagttttgatagttaagcctaaaaaaaccttatgcacgtaaaa |
45802738 |
T |
|
| Q |
234 |
taaaaaggtaatgagataattagtctccatgtttgagaccactattaagggtaaaataaggatagctcacatgcactttatattctgaataagc------ |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45802737 |
taaaaaggtaatgagataattagtctccatgtttgagaccactattgagggtaaaataaggatagctcacatgcactttatattctgaataagccaaacg |
45802638 |
T |
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| Q |
328 |
----gaaagccccgtataacacccatgtttggtaatacgatggatc |
369 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45802637 |
ataggaaagccccgtataacacccatgcttggtaatacgatggatc |
45802592 |
T |
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