View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5997_low_7 (Length: 307)
Name: NF5997_low_7
Description: NF5997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5997_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 33120366 - 33120076
Alignment:
| Q |
1 |
caatttatttatttttcgatgacatatataggactcgtctcgagcttaacttatgaactaggtttgttcccaagatcgaaaccaagttttctttcttcaa |
100 |
Q |
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| T |
33120366 |
caatttatttatttttcgatgacatatataggactcgtcacgagcttaacttatgagctaggtttgttcccaagatcgaaaccaagttttctttcttcaa |
33120267 |
T |
|
| Q |
101 |
gtaatttttccatctcctccataggaactcccttagtttctggtacaaaaataataacaaaaacaatggtcatacaactaattactccaaaagccaggaa |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33120266 |
gtaatttttccatctcctccattggaactcccttagtttctgggacaaaaataataacaaaaacaatggccatacaactaattactccaaaagccaggaa |
33120167 |
T |
|
| Q |
201 |
tgtccatgcagtcccaagaagttctatgacagataaaaaggattgagaaacaatgaggttagagacccacactgttgttgatgctattcct |
291 |
Q |
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| T |
33120166 |
tgtccatgcagtcccaagaagttctatgacagataaaaaggattgagaaacaatgaggttagagacccacactgttgttgatgctattcct |
33120076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 33116924 - 33116864
Alignment:
| Q |
231 |
agataaaaaggattgagaaacaatgaggttagagacccacactgttgttgatgctattcct |
291 |
Q |
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|||||||||||||||||||||||| ||||| |||| ||| || ||||||| || |||||| |
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| T |
33116924 |
agataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagccattcct |
33116864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 21491884 - 21491934
Alignment:
| Q |
241 |
gattgagaaacaatgaggttagagacccacactgttgttgatgctattcct |
291 |
Q |
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||||||||||||| ||||| || ||||||||||||||||||||||||||| |
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| T |
21491884 |
gattgagaaacaacaaggttggaaacccacactgttgttgatgctattcct |
21491934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 21558324 - 21558372
Alignment:
| Q |
121 |
ataggaactcccttagtttctggtacaaaaataataacaaaaacaatgg |
169 |
Q |
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||||||| |||||| |||||||| ||||||| ||| ||||||||||||| |
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| T |
21558324 |
ataggaagtccctttgtttctggcacaaaaacaatgacaaaaacaatgg |
21558372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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