View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5997_low_8 (Length: 275)
Name: NF5997_low_8
Description: NF5997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5997_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 11438409 - 11438264
Alignment:
| Q |
9 |
aaagtttacttcatctttcatttagtgcactgtgcacacttagtcacttaaagtaatttttattatattagggtctctttgacaagacattattttgagc |
108 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
11438409 |
aaagtttacttcaactttcatttagtgcatagtgcacacttagtcacttaaagtaatttttattatattagggtctgtttcacaagacatcattttgagc |
11438310 |
T |
|
| Q |
109 |
ttatagcttataatttatgtcttaaaatttgactagaaaagatctatctgtta |
161 |
Q |
| |
|
| ||||| ||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
11438309 |
t-------tataacttatgtcttaaaatttgactaaaaaagatctatttgtta |
11438264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 11436033 - 11435983
Alignment:
| Q |
218 |
ataagctaatccaagtagcttaaaacttatagtttatcgttattcatctca |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11436033 |
ataagctaatccaagtagcttaaaacttatagtttatcgttattcatctca |
11435983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 11437365 - 11437311
Alignment:
| Q |
157 |
tgttaaccatcatttttt-cataagtttatagcttatttttactaacttatagca |
210 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11437365 |
tgttaaccatcatttttttcataaacttatagcttatttttactaacttatagca |
11437311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 28736319 - 28736218
Alignment:
| Q |
135 |
atttgactagaaaagatctatctgttaaccatcattttttcataagtttatagcttatttttactaacttatagcannnnnnnataagctaatccaagta |
234 |
Q |
| |
|
||||||||| |||||| | ||| ||||| ||||||||||| ||| ||| ||||||||||||| ||||||||||| |||||||||| |||||| |
|
|
| T |
28736319 |
atttgactaaaaaagaccagcctggtaaccgtcattttttcacaagcttacagcttatttttaccaacttatagcatttttagataagctaattcaagta |
28736220 |
T |
|
| Q |
235 |
gc |
236 |
Q |
| |
|
|| |
|
|
| T |
28736219 |
gc |
28736218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 11428814 - 11428772
Alignment:
| Q |
10 |
aagtttacttcatctttcatttagtgcactgtgcacacttagt |
52 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||| |||||| |
|
|
| T |
11428814 |
aagtttacttcaactttcatttaatgcactgtgcacgcttagt |
11428772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 3535170 - 3535230
Alignment:
| Q |
179 |
agtttatagcttatttttactaacttatagcannnnnnnataagctaatccaagtagctta |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
3535170 |
agtttatagcttatttttactaacttatagcgttttttgataagctaattcaagtagctta |
3535230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 207
Target Start/End: Complemental strand, 29226133 - 29226105
Alignment:
| Q |
179 |
agtttatagcttatttttactaacttata |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29226133 |
agtttatagcttatttttactaacttata |
29226105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 37083852 - 37083909
Alignment:
| Q |
182 |
ttatagcttatttttactaacttatagcannnnnnnataagctaatccaagtagctta |
239 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |
|
|
| T |
37083852 |
ttatagcttatttttactagcttatagcaatttttaataagctaattcaagtagctta |
37083909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University