View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5997_low_9 (Length: 269)
Name: NF5997_low_9
Description: NF5997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5997_low_9 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 40062661 - 40062406
Alignment:
| Q |
14 |
ttctgatgtgcatatggttcatgttagcttagatatagtaatgagagaaatcattggaggagcaagccattctatgcatgattggaaactacaaacacga |
113 |
Q |
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| T |
40062661 |
ttctgatgtgcatatggttcatgttagcttagatatagtaatgagagaaatctttggaggagcaagccattctatgcataattggaaactacaaacacga |
40062562 |
T |
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| Q |
114 |
aaatctgaacctgaagtccaactgttagactcagcagatcaatttggttatttccataaaatactttgattgggatgtccacattaagcttaggtttgtc |
213 |
Q |
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| T |
40062561 |
aaatctgaacctgaagtccaactgttagactcagcagatcaatttggttatttccataaattactttgattgggatgtccacattaagcttaggtttgtc |
40062462 |
T |
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| Q |
214 |
tttgttcccggtgtgactccctaagaattcatcaataatatcatagaaagttataa |
269 |
Q |
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| T |
40062461 |
tttgttcccggtgtgactccctaagaattcatcaataatatcatcgaaagttataa |
40062406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 14 - 267
Target Start/End: Complemental strand, 40093313 - 40093065
Alignment:
| Q |
14 |
ttctgatgtgcatatggttcatgttagcttagatatagtaatgagagaaatcattggaggagcaagccattctatgcatgattggaaactacaaacacga |
113 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| ||||| || |
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| T |
40093313 |
ttctgatgtgtatatggttcatgttag-----atatagtaatgagagaaatcattgggggagcaagcaattctatgcataattggaaactaaaaacaaga |
40093219 |
T |
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| Q |
114 |
aaatctgaacctgaagtccaactgttagactcagcagatcaatttggttatttccataaaatactttgattgggatgtccacattaagcttaggtttgtc |
213 |
Q |
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| T |
40093218 |
aaagctgaacctgaagtccaactgttaaactcagcagatcaattttattctttccagaaagaactgtgatcgggatgtcctcattaagcttaggtttttc |
40093119 |
T |
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| Q |
214 |
tttgttcccggtgtgactccctaagaattcatcaataatatcatagaaagttat |
267 |
Q |
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| T |
40093118 |
tttgttcccggtttgactccctaagaattcatcaataatatcatagaaagttat |
40093065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 40081010 - 40080933
Alignment:
| Q |
14 |
ttctgatgtgcatatggttcatgttagcttagatatagtaatgagagaaatcattggaggagcaagccattctatgca |
91 |
Q |
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| T |
40081010 |
ttctgatgtgtatatggttcatattagcttagatatagtaatgagagaaatcactgaaggagcaagccagtctatgca |
40080933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 98 - 206
Target Start/End: Complemental strand, 40080901 - 40080793
Alignment:
| Q |
98 |
gaaactacaaacacgaaaatctgaacctgaagtccaactgttagactcagcagatcaatttggttatttccataaaatactttgattgggatgtccacat |
197 |
Q |
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||||||| ||||| ||||| ||||||||||||||||||||||| |||||| |||||||||| ||| ||||| ||| || | ||||||||||||||||| |
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| T |
40080901 |
gaaactaaaaacaagaaaagctgaacctgaagtccaactgttaaactcagtagatcaattttgttctttccggaaactagtgcgattgggatgtccacat |
40080802 |
T |
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| Q |
198 |
taagcttag |
206 |
Q |
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| T |
40080801 |
taagcttag |
40080793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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