View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5998_high_2 (Length: 416)
Name: NF5998_high_2
Description: NF5998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5998_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 54302578 - 54302985
Alignment:
| Q |
1 |
aggtagagtgtacacaattcttatggccaaaaattcatcaatcgatccatctgtcaaagaaaataaattatttccaattttcaaattgatttgagttcag |
100 |
Q |
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| T |
54302578 |
aggtagagtgtacacaattcttatggccaaaaattcatcaatcgatccatctgtcaaagaaaataaattatttccaattttcaaattgatttgagttaag |
54302677 |
T |
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| Q |
101 |
aaatgtcttcatcatttgatgcactccaaaaacaatcagctgccgtagtgataatatagacttcaatacctcttaaagccaaatgatctgcaacaaattc |
200 |
Q |
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| T |
54302678 |
aaatgtcttcatcatttgatgcactccaaaaacaatcagctgccgtagtgataatatggacttcaatacctcttaaagccaaatgatccgcaacaaattc |
54302777 |
T |
|
| Q |
201 |
tctaatctgcagacaatttcaatgtaaagaaagagttaacacgatggcaactttagagcttgacattttgaaaaaagtaaagggtgatttcagaatnnnn |
300 |
Q |
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| T |
54302778 |
tctaatctgcagacaatttgaatgtaaagaaagagctaacactatggcaactttagagcttgacattctgaaaaaagtaaagggtgatttcagaataaaa |
54302877 |
T |
|
| Q |
301 |
nnngataaacctgtatatatggagcaccgttcgccactttatacatgacaatcatgacttcctgctgcttccgtaacatttacagaaaaatgtcaccgcg |
400 |
Q |
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| T |
54302878 |
aaagataaacctgtatatatggagcatcgttcgccactttatatatgacaatcatgacttcctgctgcttccgtaacatttacagaaaaatgtcaccacg |
54302977 |
T |
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| Q |
401 |
ttcatctc |
408 |
Q |
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| T |
54302978 |
ttcatctc |
54302985 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 31306903 - 31306850
Alignment:
| Q |
162 |
ttcaatacctcttaaagccaaatgatctgcaacaaattctctaatctgcagaca |
215 |
Q |
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| T |
31306903 |
ttcaatacctcttagtgccatattttctgcaacaaaatctctaatctgcagaca |
31306850 |
T |
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