View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5998_high_6 (Length: 240)
Name: NF5998_high_6
Description: NF5998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5998_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 1352480 - 1352264
Alignment:
| Q |
16 |
atatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatag |
115 |
Q |
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|||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1352480 |
atatgcatcaactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatag |
1352381 |
T |
|
| Q |
116 |
ctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcagtgatgatgatggcttccttct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1352380 |
ctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcaccgatgatgatggcttccttct |
1352281 |
T |
|
| Q |
216 |
cgcagatatttcatctc |
232 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
1352280 |
cgcagatatttcatctc |
1352264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 2041177 - 2041384
Alignment:
| Q |
16 |
atatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatag |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2041177 |
atatgcatcaactggtcaagtgtgcagtgaggcaagattctctcaagcatatcatgatcaacatgactaacatctccaaggtattttacattatcaatac |
2041276 |
T |
|
| Q |
116 |
ctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcagtgatgatgatggcttccttct |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
2041277 |
ctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaaaagcaccgatgatgatggcttctttct |
2041376 |
T |
|
| Q |
216 |
cgcagata |
223 |
Q |
| |
|
|||||||| |
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|
| T |
2041377 |
cgcagata |
2041384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 1357601 - 1357444
Alignment:
| Q |
16 |
atatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatag |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1357601 |
atatgcatcaactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatag |
1357502 |
T |
|
| Q |
116 |
ctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacagg |
173 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
1357501 |
ctttctcaacacaaagatcaaccaaacatgtttgatcctttctcttcatcataacagg |
1357444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 1364431 - 1364328
Alignment:
| Q |
16 |
atatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatag |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1364431 |
atatgcatcaactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatag |
1364332 |
T |
|
| Q |
116 |
cttt |
119 |
Q |
| |
|
|||| |
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|
| T |
1364331 |
cttt |
1364328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 36717513 - 36717341
Alignment:
| Q |
16 |
atatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36717513 |
atatgcatcaactgatcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatag |
36717414 |
T |
|
| Q |
116 |
ctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattcctttgaaacaa |
188 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
36717413 |
ctttctcaacacaaagatcaaccaaagatgtttgatcctttctcttcatcataacaggattcctttgaaacaa |
36717341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 24620494 - 24620630
Alignment:
| Q |
31 |
tcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctcaacacaaa |
130 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24620494 |
tcaagtgtgcagtgaggcaagattcactcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctcaacacaaa |
24620593 |
T |
|
| Q |
131 |
gatcaaccaaaggtgtttgatcctttcttttcatcat |
167 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||| |
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|
| T |
24620594 |
gatcaaccaaatatgtttgatcctttctcttcatcat |
24620630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 18180126 - 18180249
Alignment:
| Q |
16 |
atatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatag |
115 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||||||| | ||||||| ||||||||||||| ||| ||||| |||||||||| ||| |||||| |||| |
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|
| T |
18180126 |
atatgcgtcaactggtcaagtgtgcagtgtggcaagattcgttcaagcagatgatgatcaacaggaccaacatttccaaggtatcttaaattatctatag |
18180225 |
T |
|
| Q |
116 |
ctttctcaacacaaagatcaacca |
139 |
Q |
| |
|
|| | | ||||||||||||||||| |
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|
| T |
18180226 |
ctgtttgaacacaaagatcaacca |
18180249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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