View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5998_low_1 (Length: 547)

Name: NF5998_low_1
Description: NF5998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5998_low_1
NF5998_low_1
[»] chr7 (29 HSPs)
chr7 (117-474)||(35985009-35985367)
chr7 (117-474)||(36006417-36006775)
chr7 (362-441)||(29229739-29229817)
chr7 (375-441)||(3094402-3094468)
chr7 (375-427)||(7307705-7307757)
chr7 (372-451)||(12423702-12423781)
chr7 (374-427)||(3485903-3485956)
chr7 (363-440)||(35274480-35274557)
chr7 (373-441)||(34427573-34427641)
chr7 (375-434)||(12810382-12810441)
chr7 (363-441)||(29229668-29229746)
chr7 (374-440)||(39751071-39751137)
chr7 (377-430)||(19509343-19509395)
chr7 (363-451)||(35274408-35274496)
chr7 (372-438)||(3967775-3967841)
chr7 (373-427)||(34465131-34465185)
chr7 (374-427)||(7307779-7307832)
chr7 (370-427)||(26982766-26982823)
chr7 (362-451)||(28038556-28038645)
chr7 (370-427)||(39962046-39962102)
chr7 (399-435)||(1690864-1690900)
chr7 (379-427)||(17801463-17801511)
chr7 (373-417)||(27034975-27035019)
chr7 (363-427)||(28785615-28785679)
chr7 (363-427)||(29046340-29046404)
chr7 (363-407)||(34670348-34670392)
chr7 (366-441)||(35985326-35985402)
chr7 (366-441)||(36006734-36006810)
chr7 (381-429)||(43250418-43250466)
[»] chr2 (25 HSPs)
chr2 (395-533)||(644001-644143)
chr2 (363-474)||(472407-472520)
chr2 (372-427)||(27279491-27279546)
chr2 (361-474)||(472444-472559)
chr2 (363-473)||(30429064-30429175)
chr2 (362-427)||(9733547-9733612)
chr2 (373-441)||(31719186-31719254)
chr2 (363-427)||(41517445-41517509)
chr2 (372-427)||(41221710-41221765)
chr2 (374-441)||(32965716-32965784)
chr2 (384-427)||(7645541-7645584)
chr2 (359-426)||(12488073-12488140)
chr2 (363-437)||(32516205-32516279)
chr2 (370-427)||(25997319-25997376)
chr2 (370-442)||(27883373-27883446)
chr2 (363-440)||(27964279-27964356)
chr2 (373-437)||(42116103-42116166)
chr2 (363-426)||(11564996-11565059)
chr2 (372-427)||(12487997-12488052)
chr2 (372-427)||(29168581-29168636)
chr2 (368-427)||(33956367-33956426)
chr2 (363-437)||(11021127-11021201)
chr2 (373-427)||(30429149-30429202)
chr2 (370-427)||(11030407-11030464)
chr2 (363-427)||(9733474-9733538)
[»] chr6 (11 HSPs)
chr6 (363-441)||(3846426-3846504)
chr6 (375-440)||(2271193-2271258)
chr6 (373-427)||(24252962-24253016)
chr6 (372-437)||(674121-674186)
chr6 (370-427)||(26478523-26478580)
chr6 (375-427)||(5069947-5069999)
chr6 (379-474)||(32650107-32650203)
chr6 (363-420)||(862817-862874)
chr6 (373-441)||(3846497-3846566)
chr6 (381-417)||(9692904-9692940)
chr6 (363-427)||(31159072-31159136)
[»] chr1 (50 HSPs)
chr1 (370-427)||(882928-882985)
chr1 (372-441)||(47154716-47154785)
chr1 (363-427)||(24419614-24419678)
chr1 (363-437)||(31032513-31032587)
chr1 (370-427)||(4604919-4604976)
chr1 (363-439)||(8174164-8174240)
chr1 (361-437)||(14231117-14231193)
chr1 (363-427)||(24419528-24419592)
chr1 (372-427)||(14231050-14231105)
chr1 (375-441)||(29853171-29853237)
chr1 (377-427)||(47084645-47084695)
chr1 (363-440)||(457640-457717)
chr1 (363-440)||(30412592-30412669)
chr1 (363-439)||(50403084-50403161)
chr1 (363-427)||(8900789-8900853)
chr1 (363-427)||(38636283-38636347)
chr1 (374-426)||(51171338-51171390)
chr1 (375-430)||(11016667-11016722)
chr1 (374-425)||(14240804-14240855)
chr1 (374-437)||(30692779-30692842)
chr1 (361-440)||(47911843-47911922)
chr1 (375-437)||(1609971-1610033)
chr1 (362-424)||(35489281-35489343)
chr1 (362-416)||(42074225-42074279)
chr1 (373-427)||(49166689-49166743)
chr1 (375-427)||(1226741-1226794)
chr1 (363-451)||(457568-457656)
chr1 (363-427)||(5368855-5368919)
chr1 (375-427)||(21945065-21945117)
chr1 (381-437)||(25554614-25554670)
chr1 (363-407)||(41944765-41944809)
chr1 (372-451)||(30412653-30412732)
chr1 (372-423)||(34890190-34890241)
chr1 (372-427)||(35489201-35489256)
chr1 (374-417)||(38636235-38636278)
chr1 (362-440)||(4540615-4540693)
chr1 (373-427)||(5346967-5347021)
chr1 (374-424)||(5700118-5700168)
chr1 (381-427)||(25554556-25554602)
chr1 (363-428)||(5091750-5091815)
chr1 (372-412)||(4604842-4604882)
chr1 (363-427)||(9675961-9676025)
chr1 (363-427)||(10325364-10325428)
chr1 (373-429)||(28437225-28437280)
chr1 (363-427)||(37515175-37515239)
chr1 (379-427)||(37925789-37925837)
chr1 (379-423)||(39498779-39498823)
chr1 (363-451)||(47911906-47911994)
chr1 (370-438)||(50267070-50267138)
chr1 (372-427)||(50692089-50692145)
[»] chr3 (36 HSPs)
chr3 (361-427)||(49733615-49733681)
chr3 (375-451)||(27786512-27786589)
chr3 (375-463)||(25108951-25109039)
chr3 (363-427)||(1779489-1779553)
chr3 (373-441)||(26331223-26331291)
chr3 (377-441)||(26601972-26602036)
chr3 (373-424)||(16867623-16867674)
chr3 (372-427)||(55121178-55121233)
chr3 (363-425)||(26331299-26331361)
chr3 (363-437)||(30122026-30122100)
chr3 (363-424)||(28732543-28732604)
chr3 (363-474)||(55121206-55121319)
chr3 (373-437)||(31836482-31836546)
chr3 (370-437)||(18093849-18093916)
chr3 (373-427)||(28732463-28732518)
chr3 (363-437)||(29212914-29212988)
chr3 (369-423)||(30121952-30122006)
chr3 (374-427)||(21150148-21150201)
chr3 (370-427)||(29595821-29595877)
chr3 (379-423)||(8380450-8380494)
chr3 (363-410)||(27786451-27786498)
chr3 (383-438)||(32711221-32711276)
chr3 (380-427)||(37914609-37914656)
chr3 (372-441)||(11534759-11534829)
chr3 (372-426)||(19790727-19790781)
chr3 (362-427)||(612556-612620)
chr3 (372-437)||(9502876-9502941)
chr3 (362-427)||(37914524-37914589)
chr3 (372-440)||(105439-105507)
chr3 (363-427)||(8036531-8036595)
chr3 (373-441)||(11534822-11534890)
chr3 (363-407)||(16867719-16867763)
chr3 (366-438)||(39682607-39682679)
chr3 (397-437)||(42896175-42896215)
chr3 (379-427)||(50561069-50561117)
chr3 (371-427)||(52417690-52417745)
[»] chr5 (35 HSPs)
chr5 (363-427)||(28499777-28499841)
chr5 (373-427)||(18550982-18551036)
chr5 (379-441)||(35463964-35464026)
chr5 (372-427)||(28351025-28351080)
chr5 (373-427)||(16829208-16829261)
chr5 (372-442)||(17768073-17768143)
chr5 (373-427)||(34445342-34445396)
chr5 (363-451)||(12645405-12645493)
chr5 (361-417)||(14751216-14751272)
chr5 (375-427)||(43221642-43221694)
chr5 (373-440)||(19087845-19087912)
chr5 (372-437)||(35458197-35458262)
chr5 (372-437)||(40773043-40773108)
chr5 (362-418)||(5865931-5865987)
chr5 (375-427)||(18200668-18200720)
chr5 (375-427)||(32741393-32741445)
chr5 (382-437)||(11417458-11417513)
chr5 (371-418)||(35458129-35458176)
chr5 (373-441)||(16829268-16829333)
chr5 (361-427)||(22398126-22398192)
chr5 (373-427)||(34445266-34445320)
chr5 (374-427)||(7065666-7065719)
chr5 (375-440)||(8850331-8850396)
chr5 (363-427)||(14751122-14751184)
chr5 (372-417)||(15474421-15474466)
chr5 (374-427)||(37514242-37514295)
chr5 (375-441)||(39063164-39063232)
chr5 (375-427)||(1249115-1249166)
chr5 (363-451)||(8850259-8850347)
chr5 (378-430)||(14958921-14958973)
chr5 (363-427)||(19087773-19087837)
chr5 (363-427)||(30046388-30046452)
chr5 (395-427)||(30916320-30916352)
chr5 (379-474)||(35463985-35464081)
chr5 (363-427)||(40772964-40773028)
[»] chr4 (31 HSPs)
chr4 (375-431)||(33508609-33508665)
chr4 (361-427)||(23614456-23614522)
chr4 (363-437)||(38562121-38562195)
chr4 (372-431)||(6371919-6371978)
chr4 (372-427)||(39993123-39993178)
chr4 (374-440)||(23673424-23673490)
chr4 (363-424)||(33508527-33508588)
chr4 (376-427)||(7277424-7277476)
chr4 (379-427)||(20291863-20291911)
chr4 (373-417)||(27990367-27990411)
chr4 (361-427)||(8679024-8679091)
chr4 (378-427)||(10065147-10065196)
chr4 (372-437)||(32125409-32125474)
chr4 (363-427)||(6371996-6372060)
chr4 (363-427)||(10065061-10065125)
chr4 (363-427)||(20291777-20291841)
chr4 (365-429)||(21208653-21208717)
chr4 (375-423)||(30920794-30920842)
chr4 (363-427)||(38562207-38562271)
chr4 (363-427)||(51303799-51303863)
chr4 (363-427)||(52840263-52840327)
chr4 (363-426)||(32125333-32125396)
chr4 (375-417)||(52280874-52280916)
chr4 (375-451)||(10350912-10350989)
chr4 (397-438)||(20114133-20114174)
chr4 (370-438)||(48601109-48601178)
chr4 (363-392)||(54918943-54918972)
chr4 (381-441)||(5535780-5535840)
chr4 (363-427)||(22235341-22235405)
chr4 (395-451)||(24099598-24099654)
chr4 (363-427)||(52673679-52673743)
[»] chr8 (22 HSPs)
chr8 (374-425)||(33072623-33072674)
chr8 (370-427)||(18147813-18147870)
chr8 (373-427)||(6590864-6590918)
chr8 (373-427)||(27988084-27988138)
chr8 (373-427)||(28045386-28045440)
chr8 (375-438)||(9503612-9503675)
chr8 (361-436)||(12354444-12354519)
chr8 (370-441)||(14578505-14578576)
chr8 (374-427)||(4578269-4578323)
chr8 (374-427)||(30557009-30557062)
chr8 (379-427)||(6649154-6649202)
chr8 (372-427)||(6616591-6616646)
chr8 (372-427)||(14113217-14113272)
chr8 (374-441)||(14578569-14578636)
chr8 (363-441)||(30114809-30114884)
chr8 (378-427)||(27988160-27988210)
chr8 (378-427)||(28045462-28045512)
chr8 (385-418)||(8337233-8337266)
chr8 (397-438)||(10396825-10396866)
chr8 (376-421)||(12966071-12966116)
chr8 (374-427)||(40737903-40737956)
chr8 (375-427)||(9503532-9503584)
[»] scaffold0514 (1 HSPs)
scaffold0514 (375-427)||(5827-5879)
[»] scaffold0003 (1 HSPs)
scaffold0003 (375-423)||(320756-320804)
[»] scaffold0777 (1 HSPs)
scaffold0777 (372-427)||(4716-4771)
[»] scaffold0470 (1 HSPs)
scaffold0470 (372-427)||(5877-5932)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 117 - 474
Target Start/End: Original strand, 35985009 - 35985367
Alignment:
Q  117 aattgggtattctctacgattaacggcatagactgataagtctccaaaccgagtagaaccacaatgagtagcaaagctctctcttaaaatatttatcatt 216  Q
    |||||||||||||||||| ||||| |||||||||||  | || |||||  | |||||||||||||||||||||||||||||| |||||||||||| ||||    
T  35985009 aattgggtattctctacgcttaacagcatagactgactaatccccaaattgggtagaaccacaatgagtagcaaagctctcttttaaaatatttaacatt 35985108  T
Q  217 gttatatgtagttctttaacatgtgtttttaagggtctaaagatgtatgttaagaaattcaaaagtaaaaattttgcatttaaaataacacaaatttata 316  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||  || | |||||||||||||||| |||||||||||||||||||||||    
T  35985109 gttatatgtagttctttaacatgtgttcttaagggtctaaagatgtatgttaatgaacttaaaagtaaaaattttgtatttaaaataacacaaatttata 35985208  T
Q  317 tattcttaaggaacttagatatacgacttttgagacacgattattgtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaat 416  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||| | |||||||||| || |||||||    
T  35985209 tattcttaaggaacttagatattcgacttttgagacacaattattgtactcctttcgatcacatttataagcaaaatacaactttttagattaattgaat 35985308  T
Q  417 aactaatgtatatggcctatatatacacctaatac-ttagttattcaagtaacctaaaa 474  Q
    |||||||||||||| ||||||||||   | ||||| |||||||||||| ||| ||||||    
T  35985309 aactaatgtatatgacctatatataagtcaaatacattagttattcaattaatctaaaa 35985367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 117 - 474
Target Start/End: Original strand, 36006417 - 36006775
Alignment:
Q  117 aattgggtattctctacgattaacggcatagactgataagtctccaaaccgagtagaaccacaatgagtagcaaagctctctcttaaaatatttatcatt 216  Q
    |||||||||||||||||| ||||| |||||||||||  | || |||||  | |||||||||||||||||||||||||||||| |||||||||||| ||||    
T  36006417 aattgggtattctctacgcttaacagcatagactgactaatccccaaattgggtagaaccacaatgagtagcaaagctctcttttaaaatatttaacatt 36006516  T
Q  217 gttatatgtagttctttaacatgtgtttttaagggtctaaagatgtatgttaagaaattcaaaagtaaaaattttgcatttaaaataacacaaatttata 316  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||  || | |||||||||||||||| |||||||||||||||||||||||    
T  36006517 gttatatgtagttctttaacatgtgttcttaagggtctaaagatgtatgttaatgaacttaaaagtaaaaattttgtatttaaaataacacaaatttata 36006616  T
Q  317 tattcttaaggaacttagatatacgacttttgagacacgattattgtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaat 416  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||| | |||||||||| || |||||||    
T  36006617 tattcttaaggaacttagatattcgacttttgagacacaattattgtactcctttcgatcacatttataagcaaaatacaactttttagattaattgaat 36006716  T
Q  417 aactaatgtatatggcctatatatacacctaatac-ttagttattcaagtaacctaaaa 474  Q
    |||||||||||||| ||||||||||   | ||||| |||||||||||| ||| ||||||    
T  36006717 aactaatgtatatgacctatatataagtcaaatacattagttattcaattaatctaaaa 36006775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 362 - 441
Target Start/End: Complemental strand, 29229817 - 29229739
Alignment:
Q  362 gtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    ||||||| | |||||| |||||||||||||| | |||||||||||||||||||||||||||||||| || ||||||||||    
T  29229817 gtactccctccggtcatatttataagcaaaa-acaactttttaggttcattgaataactaatgtatctgacctatatata 29229739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 375 - 441
Target Start/End: Complemental strand, 3094468 - 3094402
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    ||||||||||||| |||| ||||||||| |||||||||||||||||||||||  ||| |||||||||    
T  3094468 tcacatttataagtaaaaaataacttttaaggttcattgaataactaatgtacctggtctatatata 3094402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 375 - 427
Target Start/End: Original strand, 7307705 - 7307757
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||||| || ||||||||||||||||||||| |||||||    
T  7307705 tcacatttataagcaaaacacaattttttaggttcattgaataacgaatgtat 7307757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 451
Target Start/End: Complemental strand, 12423781 - 12423702
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatatacacctaatac 451  Q
    |||||||||||||||||||||    |||||||||||||||||||||  |||||||| || |||||||||| ||| |||||    
T  12423781 cggtcacatttataagcaaaaatgtactttttaggttcattgaatacataatgtatttgacctatatatagaccaaatac 12423702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 3485956 - 3485903
Alignment:
Q  374 gtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||||||||||| || ||||||| ||||||||||| |||||||||    
T  3485956 gtcacatttataagcaaaacacaattttttagattcattgaatatctaatgtat 3485903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 440
Target Start/End: Complemental strand, 35274557 - 35274480
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatat 440  Q
    |||||| | |||||||||||||||||||||    |||||||||||||||||||||  |||||||| ||| ||||||||    
T  35274557 tactccctccggtcacatttataagcaaaaatgcactttttaggttcattgaatacataatgtatttggtctatatat 35274480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 34427641 - 34427573
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    ||||||||||||||||||||  ||| |||||| ||||||| |||||||||| ||| || ||||||||||    
T  34427641 ggtcacatttataagcaaaaagtaattttttaagttcattcaataactaatatatctgacctatatata 34427573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 434
Target Start/End: Complemental strand, 12810441 - 12810382
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcct 434  Q
    |||||||| ||||||||||| ||||||||||||  ||||||||| |||||||| ||||||    
T  12810441 tcacatttgtaagcaaaacacaactttttaggtatattgaataattaatgtatctggcct 12810382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 441
Target Start/End: Original strand, 29229668 - 29229746
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    |||||| | ||||||||| ||||||||||| | |||||||||| |||||| || |||||||| || ||| |||||||||    
T  29229668 tactccatccggtcacatatataagcaaaaaacaactttttagattcattaaacaactaatgcatttggtctatatata 29229746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 39751071 - 39751137
Alignment:
Q  374 gtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatat 440  Q
    |||| ||||||||| |||| | |||||||||| |||||| |||| ||||||||||||| ||||||||    
T  39751071 gtcatatttataagtaaaaaacaactttttagattcattaaatatctaatgtatatggtctatatat 39751137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 377 - 430
Target Start/End: Complemental strand, 19509395 - 19509343
Alignment:
Q  377 acatttataagcaaaacataactttttaggttcattgaataactaatgtatatg 430  Q
    |||||||||||||||| | |||||||||||| ||||||||||||||| ||||||    
T  19509395 acatttataagcaaaaaa-aactttttaggtacattgaataactaatatatatg 19509343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 451
Target Start/End: Original strand, 35274408 - 35274496
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatatacacctaatac 451  Q
    |||||| | ||||||||||||||||||||| || ||||||| | |||||| ||||  |||||||| ||| | ||||||| ||| |||||    
T  35274408 tactccctccggtcacatttataagcaaaaaatcacttttttgattcattcaatatttaatgtatttggtcaatatatagaccaaatac 35274496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 3967841 - 3967775
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatat 438  Q
    |||||||  |||||||||||| |  |||||||||||||||||||||| | |||||| ||| ||||||    
T  3967841 cggtcactattataagcaaaaaactactttttaggttcattgaataaatgatgtatgtggactatat 3967775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 427
Target Start/End: Original strand, 34465131 - 34465185
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||| |||||   |||||||||||||||||  |||||||||||||    
T  34465131 ggtcacatttataaacaaaaatcaactttttaggttcattatataactaatgtat 34465185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 7307832 - 7307779
Alignment:
Q  374 gtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||| |||| ||| ||||||| || |||||||||||||||||| ||||||||||    
T  7307832 gtcatatttttaaccaaaacacaattttttaggttcattgaatgactaatgtat 7307779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 26982766 - 26982823
Alignment:
Q  370 ttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||  ||||||||||||| | ||||||||| | |||||||||| ||||||||    
T  26982766 ttcggtcactattataagcaaaacttcactttttagatacattgaataattaatgtat 26982823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 451
Target Start/End: Complemental strand, 28038645 - 28038556
Alignment:
Q  362 gtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatatacacctaatac 451  Q
    ||||||| | |||| |||||||||||||||| |  ||||||||| |||||| ||||  |||||||| ||| | ||||||| ||| |||||    
T  28038645 gtactccctccggttacatttataagcaaaaaaacactttttagattcattcaatacttaatgtatttggtcaatatatagaccaaatac 28038556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 39962046 - 39962102
Alignment:
Q  370 ttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||| |||| ||||| |||||| || |||||| |||||||||||    
T  39962046 ttcggtcacatttataagtaaaaaataaccttttagatttattgaa-aactaatgtat 39962102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 435
Target Start/End: Original strand, 1690864 - 1690900
Alignment:
Q  399 tttttaggttcattgaataactaatgtatatggccta 435  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  1690864 tttttaggtttattgaataacttatgtatatggccta 1690900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 17801511 - 17801463
Alignment:
Q  379 atttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||| ||||| | |||||||||| |||||||||||| ||||||||    
T  17801511 atttataatcaaaaaacaactttttagattcattgaataattaatgtat 17801463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 417
Target Start/End: Complemental strand, 27035019 - 27034975
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaata 417  Q
    |||||| |||||||||||||||| ||||||||  |||||||||||    
T  27035019 ggtcacgtttataagcaaaacatcactttttaaattcattgaata 27034975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 28785615 - 28785679
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||| ||||| |||||||||||||||||| | || | |||||||| ||| ||||| ||||||||    
T  28785615 tactcgtttcgatcacatttataagcaaaaaacaattgtttaggtttattaaataaataatgtat 28785679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 29046404 - 29046340
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||| | ||||||||||||||||||| | || ||||||  |||||| |||| |||||||||    
T  29046404 tactccttacagtcacatttataagcaaaaaacaattttttaaattcattaaatatctaatgtat 29046340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 34670348 - 34670392
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggt 407  Q
    |||||| | ||||||||||||||||||||| | ||||||||||||    
T  34670348 tactccctccggtcacatttataagcaaaaaacaactttttaggt 34670392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 35985402 - 35985326
Alignment:
Q  366 tcctttcggtcacatttataagcaaa-acataactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    |||||||| | ||||||||||| ||| | | |||||||||| || |||||||||||||||||| || | ||||||||    
T  35985402 tcctttcgattacatttataagaaaagaaacaactttttagattaattgaataactaatgtatttgacttatatata 35985326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 36006810 - 36006734
Alignment:
Q  366 tcctttcggtcacatttataagcaaa-acataactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    |||||||| | ||||||||||| ||| | | |||||||||| || |||||||||||||||||| || | ||||||||    
T  36006810 tcctttcgattacatttataagaaaagaaacaactttttagattaattgaataactaatgtatttgacttatatata 36006734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 43250466 - 43250418
Alignment:
Q  381 ttataagcaaaacataactttttaggttcattgaataactaatgtatat 429  Q
    ||||||||||||| | ||||||||| | |||||||||| ||||||||||    
T  43250466 ttataagcaaaactttactttttagatacattgaataattaatgtatat 43250418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 395 - 533
Target Start/End: Complemental strand, 644143 - 644001
Alignment:
Q  395 taactttttaggttcattgaataactaatgtatatggcc--tatatatacacctaatacttagttattcaagtaacctaaaatgnnnnnnnnccatacaa 492  Q
    |||||||||||||||||||||||||||||||||||| ||  |||||||| |||||||| |||||||||||||||||||||||||        || |||||    
T  644143 taactttttaggttcattgaataactaatgtatatgacctatatatatagacctaataattagttattcaagtaacctaaaatgttttttttccttacaa 644044  T
Q  493 atatgacct--gtgagagtatatatatcactacctatatgcat 533  Q
    || ||||||  | ||||||||||||||||||||||||||||||    
T  644043 atgtgacctcagagagagtatatatatcactacctatatgcat 644001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 474
Target Start/End: Original strand, 472407 - 472520
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatgg-cctatatatacacctaata-cttagttatt 460  Q
    |||||| | ||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| ||| | ||| |||| ||| ||||  |||||||||    
T  472407 tactccctccggtcacatttataaacaaaatataactttttaggtttattgaataactaatgtatttggtcatatttatagaccaaatatattagttatt 472506  T
Q  461 caagtaacctaaaa 474  Q
    ||| ||||||||||    
T  472507 caattaacctaaaa 472520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 372 - 427
Target Start/End: Original strand, 27279491 - 27279546
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  27279491 cggtcacatttataagcaaaaaataattttttaggttcattgaataactaatgtat 27279546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 361 - 474
Target Start/End: Complemental strand, 472559 - 472444
Alignment:
Q  361 tgtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatata-cacctaatac-ttagtta 458  Q
    |||||||| | |||||||| |||||||||||||| || |||||||||| |||||||||||||| ||| ||| ||||| |||  ||| ||||| |||||||    
T  472559 tgtactccatccggtcacaattataagcaaaacacaattttttaggttaattgaataactaatatatttggtctataaatatgaccaaatacattagtta 472460  T
Q  459 ttcaagtaacctaaaa 474  Q
    |||||  |||||||||    
T  472459 ttcaataaacctaaaa 472444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 363 - 473
Target Start/End: Original strand, 30429064 - 30429175
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatatacacctaatac-ttagttattc 461  Q
    |||||| | ||||||||||||||||||||| | ||||||||||||||||| ||||| |||||||| || ||| |||||| ||   |||| ||||||||||    
T  30429064 tactccctccggtcacatttataagcaaaaaacaactttttaggttcattcaataattaatgtatctgacctttatatagactagatacattagttattc 30429163  T
Q  462 aagtaacctaaa 473  Q
    ||  ||||||||    
T  30429164 aataaacctaaa 30429175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 427
Target Start/End: Complemental strand, 9733612 - 9733547
Alignment:
Q  362 gtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||| | ||||||||||||||| ||||| | || |||||||||||||||||||||||||||||    
T  9733612 gtactccctccggtcacatttataaacaaaaaacaattttttaggttcattgaataactaatgtat 9733547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 31719186 - 31719254
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    ||||||||||||||| |||| | |||||||||| ||||||||||||| ||||||| ||| |||||||||    
T  31719186 ggtcacatttataagtaaaaaacaactttttagattcattgaataacaaatgtatttggactatatata 31719254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 41517509 - 41517445
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| | ||||||||||||||||||||| ||||||||||| || |||||||||| ||||||||    
T  41517509 tactccctccggtcacatttataagcaaaaaataactttttaagtacattgaataattaatgtat 41517445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 427
Target Start/End: Complemental strand, 41221765 - 41221710
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| ||||||||| |||| |||| |||||||||||||||||||||||||||||    
T  41221765 cggtcatatttataagtaaaaaataaatttttaggttcattgaataactaatgtat 41221710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 441
Target Start/End: Complemental strand, 32965784 - 32965716
Alignment:
Q  374 gtcacatttataagcaaaacataactttttaggtt-cattgaataactaatgtatatggcctatatata 441  Q
    |||||||||||||| ||||   |||||||||| || ||||||||||||||||||| |||||||||||||    
T  32965784 gtcacatttataagtaaaaaccaactttttagatttcattgaataactaatgtatttggcctatatata 32965716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 427
Target Start/End: Complemental strand, 7645584 - 7645541
Alignment:
Q  384 taagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  7645584 taagcaaaacataattttttaggttcattaaataactaatgtat 7645541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 426
Target Start/End: Complemental strand, 12488140 - 12488073
Alignment:
Q  359 attgtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgta 426  Q
    |||||||||| |  ||||||||||| |||||||| | || |||||||||||||||| |||||||||||    
T  12488140 attgtactccctctggtcacatttacaagcaaaaaacaattttttaggttcattgagtaactaatgta 12488073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 437
Target Start/End: Complemental strand, 32516279 - 32516205
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata 437  Q
    |||||||| | |||||||||||||| |||||| || ||||||  |||||||||||| |||||||| ||| |||||    
T  32516279 tactccttcctgtcacatttataagtaaaacacaattttttaaattcattgaataattaatgtatttggtctata 32516205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 25997319 - 25997376
Alignment:
Q  370 ttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||| ||| ||||||||||||||  ||| |||||| ||||||||||||||||||||||    
T  25997319 ttcgatcatatttataagcaaaatgtaattttttatgttcattgaataactaatgtat 25997376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 370 - 442
Target Start/End: Complemental strand, 27883446 - 27883373
Alignment:
Q  370 ttcggtcacatttataagcaaaacataac-tttttaggttcattgaataactaatgtatatggcctatatatac 442  Q
    ||||||||||||||||||||||| | |   ||||||||||||| ||||| | ||||||| ||||||||||||||    
T  27883446 ttcggtcacatttataagcaaaaaaaattatttttaggttcatggaatatcaaatgtatttggcctatatatac 27883373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 363 - 440
Target Start/End: Original strand, 27964279 - 27964356
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatat 440  Q
    |||||| | ||||||| |||||||||||||  | |||||||||||||||| ||||| | |||||| ||| ||||||||    
T  27964279 tactccctccggtcacttttataagcaaaaattgactttttaggttcattcaataaattatgtatgtggtctatatat 27964356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 42116166 - 42116103
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata 437  Q
    |||||||||||||  ||||||| |||||||||||||||||||||||  ||||||| ||| |||||    
T  42116166 ggtcacatttatat-caaaacacaactttttaggttcattgaataataaatgtatttggtctata 42116103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 426
Target Start/End: Original strand, 11564996 - 11565059
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgta 426  Q
    |||||| | ||||||||||||||||||||| | ||| |||||| | |||||||||| |||||||    
T  11564996 tactccctccggtcacatttataagcaaaaaacaacattttagatacattgaataattaatgta 11565059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 427
Target Start/End: Original strand, 12487997 - 12488052
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||| ||||| || | || |||||||||||||||| ||||||||||||    
T  12487997 cggtcacatttacaagcagaaaacaattttttaggttcattgagtaactaatgtat 12488052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 427
Target Start/End: Complemental strand, 29168636 - 29168581
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||||||||||| |||||||||||  | |||| ||||| ||||||||    
T  29168636 cggtcacatttataagcaaaaaataactttttaaatacattaaataattaatgtat 29168581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 427
Target Start/End: Complemental strand, 33956426 - 33956367
Alignment:
Q  368 ctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||||| |||| |||| ||||||| |  ||||||||| ||||||||    
T  33956426 ctttcggtcacatttataagaaaaaaataaatttttagatatattgaataattaatgtat 33956367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 437
Target Start/End: Complemental strand, 11021201 - 11021127
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata 437  Q
    |||||| | ||||||||||||||||  ||| | |||||||||  ||||||| ||||||||||||| || ||||||    
T  11021201 tactccctacggtcacatttataagggaaaaacaactttttattttcattggataactaatgtatctgacctata 11021127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 427
Target Start/End: Complemental strand, 30429202 - 30429149
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||||| | || | |||||||| ||||||||||||||||||    
T  30429202 ggtcacatttataagcaaaaaa-aattgtttaggtttattgaataactaatgtat 30429149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 11030407 - 11030464
Alignment:
Q  370 ttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||| |||||||||||  ||||| ||||  ||||||||||||||||| ||||||||||    
T  11030407 ttcgatcacatttatagacaaaaaataatattttaggttcattgaatgactaatgtat 11030464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 9733474 - 9733538
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| | ||||||||||||||||||||| | || ||||||||| ||||| || | ||||||||    
T  9733474 tactccctccggtcacatttataagcaaaaaacaattttttaggtgcattggatgattaatgtat 9733538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 363 - 441
Target Start/End: Original strand, 3846426 - 3846504
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    |||||| ||||||||||||||||||||||| |||| |||||| ||||||||||||| ||||||||||| ||||||||||    
T  3846426 tactcccttcggtcacatttataagcaaaaaataattttttaagttcattgaataaataatgtatatgacctatatata 3846504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 2271258 - 2271193
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatat 440  Q
    |||||||||||||||||| |||||||||||| ||||||||| ||||||||||| || | |||||||    
T  2271258 tcacatttataagcaaaaaataactttttagattcattgaacaactaatgtatttgacatatatat 2271193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 373 - 427
Target Start/End: Complemental strand, 24253016 - 24252962
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||| |||||||||||||| |||||||||||||| |||||||||| ||||||||    
T  24253016 ggtcatatttataagcaaaaaataactttttaggtacattgaataattaatgtat 24252962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 437
Target Start/End: Complemental strand, 674186 - 674121
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata 437  Q
    ||||||||||||||||||||| | || ||||||| ||||||||||||||||| ||| ||| |||||    
T  674186 cggtcacatttataagcaaaaaacaattttttagattcattgaataactaatatatttggtctata 674121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 26478580 - 26478523
Alignment:
Q  370 ttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| ||||||||||||||||||  |||||||||||| |||||||| |||||||||    
T  26478580 ttcggttacatttataagcaaaacactactttttaggtttattgaatacctaatgtat 26478523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 427
Target Start/End: Original strand, 5069947 - 5069999
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||| | |||||||||| | |||||||||| ||||||||    
T  5069947 tcacatttataagcaaaaaacaactttttagatacattgaataattaatgtat 5069999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 474
Target Start/End: Original strand, 32650107 - 32650203
Alignment:
Q  379 atttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata-tatacacctaatacttagttattcaagtaacctaaaa 474  Q
    ||||||||||||||||||| ||||||| || |||||||| ||||| ||| | | ||||| |||| ||| ||||| ||| |||||||  |||||||||    
T  32650107 atttataagcaaaacataattttttagatttattgaatacctaatatatttagtctatattatataccaaatacataggtattcaatcaacctaaaa 32650203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 420
Target Start/End: Original strand, 862817 - 862874
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataact 420  Q
    |||||| | |||||| ||||||||||||||  | ||||||||||| ||||||||||||    
T  862817 tactccctccggtcatatttataagcaaaaattgactttttaggtacattgaataact 862874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 3846566 - 3846497
Alignment:
Q  373 ggtcacatttataagcaaaaca-taactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    |||| ||||||||||||||| | |||||||||| ||||||| |||| |||||||||  || |||||||||    
T  3846566 ggtcgcatttataagcaaaaaaataactttttaagttcatttaatatctaatgtatccggtctatatata 3846497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 9692940 - 9692904
Alignment:
Q  381 ttataagcaaaacataactttttaggttcattgaata 417  Q
    |||||||||||||| |||||||| |||||||||||||    
T  9692940 ttataagcaaaacacaacttttttggttcattgaata 9692904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 31159072 - 31159136
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| || ||| ||||||||||| |||| |||  |||||| ||||||||||||| ||||||||    
T  31159072 tactccattgggttacatttataagtaaaaaatacatttttatgttcattgaataattaatgtat 31159136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 50)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 882928 - 882985
Alignment:
Q  370 ttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  882928 ttcggtcacatttataagtaaaatataactttttaggttcattgaataactaatgtat 882985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 372 - 441
Target Start/End: Complemental strand, 47154785 - 47154716
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    |||||||||| |||||||||| | ||||||||||||||||| ||||| |||||||| |||||||||||||    
T  47154785 cggtcacattaataagcaaaaaacaactttttaggttcatttaataaataatgtatctggcctatatata 47154716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 24419678 - 24419614
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||| ||||||||||||||||||||| | |||||||||||| |||||||||| ||||||||    
T  24419678 tactccttccggtcacatttataagcaaaaaacaactttttaggtacattgaataattaatgtat 24419614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 437
Target Start/End: Complemental strand, 31032587 - 31032513
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata 437  Q
    |||||| | ||||||||||||||||||||||  || |||||||||||||| |||||||||||||| ||| |||||    
T  31032587 tactccatccggtcacatttataagcaaaactcaattttttaggttcattaaataactaatgtatttggtctata 31032513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 4604976 - 4604919
Alignment:
Q  370 ttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||| |||||||||    
T  4604976 ttcggtcacatttataagcaaaaaatcactttttaggtttattgaatacctaatgtat 4604919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 439
Target Start/End: Complemental strand, 8174240 - 8174164
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatata 439  Q
    |||||| | ||||||||||||||||||||||| |||||||||  |||||||||| | |||||||| ||| |||||||    
T  8174240 tactccctccggtcacatttataagcaaaacacaactttttatattcattgaatgattaatgtatctggtctatata 8174164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 14231193 - 14231117
Alignment:
Q  361 tgtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata 437  Q
    |||||||| | | |||| ||||||||| |||||| ||| |||||||||||||||||||||||||||| ||| |||||    
T  14231193 tgtactccctcccgtcatatttataaggaaaacacaacattttaggttcattgaataactaatgtatctggtctata 14231117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 24419528 - 24419592
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| | ||||||||||||||||||||| | |||||||||| ||||||||| |||||||||||    
T  24419528 tactccctccggtcacatttataagcaaaaaagaactttttagattcattgaagaactaatgtat 24419592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 427
Target Start/End: Original strand, 14231050 - 14231105
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| | ||||||||    
T  14231050 cggtcacatttataagcaaaaaataactttttacgttcattgaatgattaatgtat 14231105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 375 - 441
Target Start/End: Original strand, 29853171 - 29853237
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    ||||||||||||||||||  |||| ||||||||||||| |||||||||||||| || | ||||||||    
T  29853171 tcacatttataagcaaaatgtaacattttaggttcattcaataactaatgtatctgacttatatata 29853237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 47084695 - 47084645
Alignment:
Q  377 acatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||| |||||||||| ||||||||||||| |||||||||||||||    
T  47084695 acatttataaacaaaacataattttttaggttcatagaataactaatgtat 47084645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 440
Target Start/End: Complemental strand, 457717 - 457640
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatat 440  Q
    |||||| | |||||||||||||||||||||    |||||||||||||||||||||  |||||||| ||| ||||||||    
T  457717 tactccctccggtcacatttataagcaaaaatgcactttttaggttcattgaatacataatgtatttggtctatatat 457640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 440
Target Start/End: Original strand, 30412592 - 30412669
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatat 440  Q
    |||||| | |||||||||||||||||||||    |||||||||||||||||||||  |||||||| ||| ||||||||    
T  30412592 tactccctccggtcacatttataagcaaaaatgcactttttaggttcattgaatacataatgtatttggtctatatat 30412669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 439
Target Start/End: Original strand, 50403084 - 50403161
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaa-cataactttttaggttcattgaataactaatgtatatggcctatata 439  Q
    ||||| ||||| |||||||||||||||||| || |||||||||  || |||||||||||||||||| ||| |||||||    
T  50403084 tactcatttcgatcacatttataagcaaaaacacaactttttaaatttattgaataactaatgtatctggtctatata 50403161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 8900789 - 8900853
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| |||||||||||||||||| || | | |||||||||||| |||||||||| ||||||||    
T  8900789 tactccattcggtcacatttataagtaataaacaactttttaggtacattgaataattaatgtat 8900853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 38636347 - 38636283
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| | |||||||||||| |||||||| | |||||||||| || ||||||||||||||||||    
T  38636347 tactccctccggtcacatttaaaagcaaaaaacaactttttagattgattgaataactaatgtat 38636283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 51171390 - 51171338
Alignment:
Q  374 gtcacatttataagcaaaacataactttttaggttcattgaataactaatgta 426  Q
    |||||||||||||| |||| ||||||||||| ||||||| |||||||||||||    
T  51171390 gtcacatttataagtaaaaaataactttttaagttcattaaataactaatgta 51171338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 430
Target Start/End: Complemental strand, 11016722 - 11016667
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatg 430  Q
    |||||||||||| |||||   ||||||||||||| |||||||||||||||||||||    
T  11016722 tcacatttataaacaaaaatcaactttttaggtttattgaataactaatgtatatg 11016667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 425
Target Start/End: Complemental strand, 14240855 - 14240804
Alignment:
Q  374 gtcacatttataagcaaaacataactttttaggttcattgaataactaatgt 425  Q
    |||| ||||||||||||| || ||| ||||||||||||||||||||||||||    
T  14240855 gtcatatttataagcaaagcacaacattttaggttcattgaataactaatgt 14240804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 437
Target Start/End: Original strand, 30692779 - 30692842
Alignment:
Q  374 gtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata 437  Q
    |||||||||||||| |||||| |||||||||||||  ||||||| ||||||||| ||| |||||    
T  30692779 gtcacatttataagaaaaacacaactttttaggtttgttgaatatctaatgtatttggtctata 30692842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 361 - 440
Target Start/End: Original strand, 47911843 - 47911922
Alignment:
Q  361 tgtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatat 440  Q
    |||||||| | ||||||||||||||| |||||    |||||||||||||||||||||  |||||||| ||| ||||||||    
T  47911843 tgtactccctccggtcacatttataaacaaaaatgcactttttaggttcattgaatacataatgtatttggtctatatat 47911922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 437
Target Start/End: Original strand, 1609971 - 1610033
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata 437  Q
    |||||||||||||||||| | |||||||||| | |||||||||| |||||||| || ||||||    
T  1609971 tcacatttataagcaaaaaacaactttttagatacattgaataattaatgtatctgacctata 1610033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 424
Target Start/End: Complemental strand, 35489343 - 35489281
Alignment:
Q  362 gtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatg 424  Q
    ||||||| | ||||||||||||||||||||| || |||||||| || |||||||||| |||||    
T  35489343 gtactccctccggtcacatttataagcaaaaaatgactttttatgtacattgaataattaatg 35489281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 42074279 - 42074225
Alignment:
Q  362 gtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaat 416  Q
    ||||||||| ||||||||||||||||||||| |  | ||||||||||||||||||    
T  42074279 gtactccttccggtcacatttataagcaaaaaactattttttaggttcattgaat 42074225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 427
Target Start/End: Complemental strand, 49166743 - 49166689
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||||| | |||||||||| | |||||||||| ||||||||    
T  49166743 ggtcacatttataagcaaaaaacaactttttagttacattgaataattaatgtat 49166689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 375 - 427
Target Start/End: Complemental strand, 1226794 - 1226741
Alignment:
Q  375 tcacatttataagcaaaaca-taactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||| | ||| |||||| ||||||||||||||||||||||    
T  1226794 tcacatttataagcaaaaaaataattttttaagttcattgaataactaatgtat 1226741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 451
Target Start/End: Original strand, 457568 - 457656
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatatacacctaatac 451  Q
    |||||| | ||||||||||||||||||||| || ||||||| | |||||| ||||  |||||||| ||| | ||||||| ||| |||||    
T  457568 tactccctccggtcacatttataagcaaaaaatcacttttttgattcattcaatatttaatgtatttggtcaatatatagaccaaatac 457656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 5368919 - 5368855
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| | |||||| ||||||||||||||  ||||||||||| | |||||||||| ||||||||    
T  5368919 tactccctccggtcatatttataagcaaaaattaactttttagatgcattgaataattaatgtat 5368855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 427
Target Start/End: Original strand, 21945065 - 21945117
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||| |||| || ||||||||| ||||||||||| |||||||||    
T  21945065 tcacatttataagtaaaaaatcactttttagattcattgaatacctaatgtat 21945117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 25554670 - 25554614
Alignment:
Q  381 ttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata 437  Q
    |||||||||||| | ||||||||||| ||||| ||||||| |||||| |||||||||    
T  25554670 ttataagcaaaaaacaactttttaggctcattaaataactgatgtatttggcctata 25554614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 41944765 - 41944809
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggt 407  Q
    |||||| ||||||||||||||||||||||| | ||||||||||||    
T  41944765 tactcccttcggtcacatttataagcaaaaaacaactttttaggt 41944809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 451
Target Start/End: Complemental strand, 30412732 - 30412653
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatatacacctaatac 451  Q
    ||||||||||||||||||||| || ||||||| | |||||| ||||  |||||||| ||| | ||||||| ||| |||||    
T  30412732 cggtcacatttataagcaaaaaatcacttttttgattcattcaatatttaatgtatttggtcaatatatagaccaaatac 30412653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 423
Target Start/End: Original strand, 34890190 - 34890241
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaat 423  Q
    ||||||||| ||||||||||| | |||||||||| | |||||||||||||||    
T  34890190 cggtcacatatataagcaaaaaacaactttttagatacattgaataactaat 34890241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 427
Target Start/End: Original strand, 35489201 - 35489256
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||||| ||||| | |||||||||| | |||||||||| ||||||||    
T  35489201 cggtcacatttataatcaaaaaacaactttttagatacattgaataattaatgtat 35489256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 417
Target Start/End: Original strand, 38636235 - 38636278
Alignment:
Q  374 gtcacatttataagcaaaacataactttttaggttcattgaata 417  Q
    ||||||||||||||||||| | |||||||||| |||||||||||    
T  38636235 gtcacatttataagcaaaaaacaactttttagattcattgaata 38636278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 440
Target Start/End: Original strand, 4540615 - 4540693
Alignment:
Q  362 gtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatat 440  Q
    ||||||| | |||||||||||||||||||||    ||||| |||||||||||||||  ||||||||  || ||||||||    
T  4540615 gtactccctccggtcacatttataagcaaaaatgtactttataggttcattgaatatataatgtattcggtctatatat 4540693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 427
Target Start/End: Original strand, 5346967 - 5347021
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||||| ||  |||||||| | |||||||||| ||||||||    
T  5346967 ggtcacatttataagcaaaaaatgtctttttagatacattgaataattaatgtat 5347021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 5700168 - 5700118
Alignment:
Q  374 gtcacatttataagcaaaacataactttttaggttcattgaataactaatg 424  Q
    ||||||||||||||||||| | ||||||||| || |||||||||| |||||    
T  5700168 gtcacatttataagcaaaaaacaactttttaagtacattgaataattaatg 5700118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 427
Target Start/End: Original strand, 25554556 - 25554602
Alignment:
Q  381 ttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||| |||||||||||| |||||||||||| | ||||||    
T  25554556 ttataagcaaaaaataactttttagattcattgaataaatgatgtat 25554602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 428
Target Start/End: Complemental strand, 5091815 - 5091750
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtata 428  Q
    ||||||||  ||||||  |||||| ||||| |  || |||||||||||||||||||||||||||||    
T  5091815 tactccttcaggtcactattataaacaaaaaactaccttttaggttcattgaataactaatgtata 5091750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 4604842 - 4604882
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcatt 412  Q
    ||||||||||||||||||||| || | ||||||||||||||    
T  4604842 cggtcacatttataagcaaaaaatcaatttttaggttcatt 4604882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 9675961 - 9676025
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| | |||||||  ||||||| ||||  |||||||||||||||||| ||||| ||||||||    
T  9675961 tactccctccggtcactattataagtaaaaattaactttttaggttcatttaataaataatgtat 9676025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 10325428 - 10325364
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| ||||||| |  ||||||| |||| |||||||||||  |||||| ||||||||||||||    
T  10325428 tactcccttcggtctctgttataaggaaaaaataactttttatattcattaaataactaatgtat 10325364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 429
Target Start/End: Original strand, 28437225 - 28437280
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatat 429  Q
    ||||| |||||||||||||| |||||||| |||| | |||||||||||||| |||||    
T  28437225 ggtcatatttataagcaaaa-ataactttataggcttattgaataactaatatatat 28437280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 37515239 - 37515175
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||||  ||||||||| ||||  ||||||||||| |||||| | ||| ||||||||    
T  37515239 tactcctttcggtcctatttataagaaaaatttaactttttagattcattaagtaattaatgtat 37515175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 427
Target Start/End: Original strand, 37925789 - 37925837
Alignment:
Q  379 atttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||| ||||| | || |||||| ||||||||||||||||||||||    
T  37925789 atttataaacaaaaaagaattttttatgttcattgaataactaatgtat 37925837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 39498779 - 39498823
Alignment:
Q  379 atttataagcaaaacataactttttaggttcattgaataactaat 423  Q
    |||||||||||||||| |||||||||  |||||| ||||||||||    
T  39498779 atttataagcaaaacaaaactttttatattcatttaataactaat 39498823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 451
Target Start/End: Complemental strand, 47911994 - 47911906
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatatacacctaatac 451  Q
    |||||| | |||||| |||||||||||||| || ||||||| | |||||| ||||  |||||||| ||| | ||||||| ||| |||||    
T  47911994 tactccctccggtcatatttataagcaaaaaatcacttttttgattcattcaatatttaatgtatttggtcaatatatagaccaaatac 47911906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 438
Target Start/End: Complemental strand, 50267138 - 50267070
Alignment:
Q  370 ttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatat 438  Q
    ||||||||  |||||||||||||||  ||||||| |||||||||||||  | |||||| ||| ||||||    
T  50267138 ttcggtcatttttataagcaaaacactactttttgggttcattgaatactttatgtatttggtctatat 50267070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 427
Target Start/End: Original strand, 50692089 - 50692145
Alignment:
Q  372 cggtcacatttataagcaaaacata-actttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||||||||||| |   |||||||||||||||| |||| |||||||||    
T  50692089 cggtcacatttataagcaaaaaaactactttttaggttcattaaatacctaatgtat 50692145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 427
Target Start/End: Original strand, 49733615 - 49733681
Alignment:
Q  361 tgtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||| |||||||||||||||||||||||||||||||||| || ||||||||  ||||||||    
T  49733615 tgtactccttccggtcacatttataagcaaaacataactttttagatttattgaatacttaatgtat 49733681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 375 - 451
Target Start/End: Complemental strand, 27786589 - 27786512
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata-tatacacctaatac 451  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| ||| ||| ||||| |||||||| |||||    
T  27786589 tcacatttataagcaaaacacaactttttaggttcattgaatacctaatatatttggtctatattatacaccaaatac 27786512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 463
Target Start/End: Complemental strand, 25109039 - 25108951
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatatacacctaatac-ttagttattcaa 463  Q
    ||||||||||||| |||| |||| |||||| |||||||||||||||||||||||| |||| |||||| |||  |||| ||||||||||||    
T  25109039 tcacatttataagtaaaaaataattttttatgttcattgaataactaatgtatat-gcctttatatataccgtatacattagttattcaa 25108951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 1779489 - 1779553
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| | ||||||||||||||| |||||||||||||||||||| |||||||||| | ||||||    
T  1779489 tactccctccggtcacatttataaacaaaacataactttttaggtacattgaataattgatgtat 1779553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 26331223 - 26331291
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    |||||||||||||||||||| | || ||| |||||||||||||| |||||||||| ||| |||||||||    
T  26331223 ggtcacatttataagcaaaaaacaattttctaggttcattgaatgactaatgtatctggtctatatata 26331291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 377 - 441
Target Start/End: Original strand, 26601972 - 26602036
Alignment:
Q  377 acatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    |||||||||||||||| | ||||||||||||||||||||||| ||| |||| | |||||||||||    
T  26601972 acatttataagcaaaaaacaactttttaggttcattgaataattaacgtatctagcctatatata 26602036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 424
Target Start/End: Original strand, 16867623 - 16867674
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatg 424  Q
    |||||||||||||||||||| | |||||||||||| ||||||||||||||||    
T  16867623 ggtcacatttataagcaaaaaacaactttttaggtacattgaataactaatg 16867674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 427
Target Start/End: Original strand, 55121178 - 55121233
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||||| ||||| | || |||||||||||||||||||||||||||||    
T  55121178 cggtcacatttataaacaaaaaacaattttttaggttcattgaataactaatgtat 55121233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 363 - 425
Target Start/End: Complemental strand, 26331361 - 26331299
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgt 425  Q
    |||||| | ||||||||||||||||||||| | ||||||||||||||||||||  ||||||||    
T  26331361 tactccctccggtcacatttataagcaaaaaacaactttttaggttcattgaaagactaatgt 26331299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 363 - 437
Target Start/End: Complemental strand, 30122100 - 30122026
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata 437  Q
    |||||| |||| |||||||||||||||||| |||| |||||||||  ||||||||| |||||||| || ||||||    
T  30122100 tactccattcgatcacatttataagcaaaaaataattttttaggtatattgaataattaatgtatctgacctata 30122026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 424
Target Start/End: Complemental strand, 28732604 - 28732543
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatg 424  Q
    |||||| |||| |||||||||||||||||| | |||||||||| |||||||||| |||||||    
T  28732604 tactcccttcgatcacatttataagcaaaatagaactttttagattcattgaatgactaatg 28732543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 474
Target Start/End: Complemental strand, 55121319 - 55121206
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatgg-cctatatatacacctaatac-ttagttatt 460  Q
    |||||||| | ||||||||||||||||||| |||||||||||| || ||| ||||| |||||||| ||| |  || |||| ||| ||||| |||||||||    
T  55121319 tactccttccagtcacatttataagcaaaaaataactttttagatttattaaataattaatgtatttggtcacatttataaaccaaatacattagttatt 55121220  T
Q  461 caagtaacctaaaa 474  Q
    |||  |||||||||    
T  55121219 caatgaacctaaaa 55121206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 31836546 - 31836482
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata 437  Q
    ||||||||||||||| |||  | ||||||||||||||||||||||| |||||||| ||| |||||    
T  31836546 ggtcacatttataagtaaatgacaactttttaggttcattgaataattaatgtatttggtctata 31836482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 437
Target Start/End: Complemental strand, 18093916 - 18093849
Alignment:
Q  370 ttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata 437  Q
    ||||||||||||||||||||| | | || |||||||||| ||||||||| |||||||| || ||||||    
T  18093916 ttcggtcacatttataagcaataaacaagtttttaggtttattgaataattaatgtatctgacctata 18093849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 427
Target Start/End: Original strand, 28732463 - 28732518
Alignment:
Q  373 ggtcacatttataagcaaaa-cataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||    
T  28732463 ggtcacatttataagtaaaaacttaacattttaggttcattgaataactaatgtat 28732518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 437
Target Start/End: Complemental strand, 29212988 - 29212914
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata 437  Q
    ||||| |||||||||||||||||||||||| |    ||||||||| |||||||||| |||||||| || ||||||    
T  29212988 tactcatttcggtcacatttataagcaaaaaactgttttttaggtacattgaataattaatgtatctgacctata 29212914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 423
Target Start/End: Original strand, 30121952 - 30122006
Alignment:
Q  369 tttcggtcacatttataagcaaaacataactttttaggttcattgaataactaat 423  Q
    ||||||||||||||||||| ||||   || |||||||||||||||||||||||||    
T  30121952 tttcggtcacatttataagtaaaaatcaattttttaggttcattgaataactaat 30122006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 21150148 - 21150201
Alignment:
Q  374 gtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||| ||||||| |||||| |||||||||||| |||||| ||||||||||||||    
T  21150148 gtcatatttatatgcaaaaaataactttttagattcattaaataactaatgtat 21150201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 29595821 - 29595877
Alignment:
Q  370 ttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||  ||||||||| |||||||||||| |||||||||| |||||    
T  29595821 ttcggtcacatttataaataaaacataattttttaggttca-tgaataactagtgtat 29595877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 8380450 - 8380494
Alignment:
Q  379 atttataagcaaaacataactttttaggttcattgaataactaat 423  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||||    
T  8380450 atttataagcaaaacataattttttaggtttattgaataattaat 8380494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 410
Target Start/End: Original strand, 27786451 - 27786498
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttca 410  Q
    |||||| ||||||||||||||||||||||| |  ||||||||||||||    
T  27786451 tactcccttcggtcacatttataagcaaaaaactactttttaggttca 27786498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 438
Target Start/End: Original strand, 32711221 - 32711276
Alignment:
Q  383 ataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatat 438  Q
    ||||||||||  | |||||||||||||||||||||| | |||||| ||||||||||    
T  32711221 ataagcaaaaagtcactttttaggttcattgaataattgatgtatttggcctatat 32711276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 427
Target Start/End: Complemental strand, 37914656 - 37914609
Alignment:
Q  380 tttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||| |||  |||||||||||||||||||| ||||||||    
T  37914656 tttataagcaaaaaatatatttttaggttcattgaataattaatgtat 37914609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 441
Target Start/End: Original strand, 11534759 - 11534829
Alignment:
Q  372 cggtcacatttataagcaaaacata-actttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    |||| |||||||||||||||| |   |||||| || ||||||||||| ||||||||||||| |||||||||    
T  11534759 cggttacatttataagcaaaaaaacgacttttaagattcattgaatacctaatgtatatggtctatatata 11534829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 426
Target Start/End: Original strand, 19790727 - 19790781
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgta 426  Q
    |||||||||||||||||||||  ||  ||||||||| |||||||||| |||||||    
T  19790727 cggtcacatttataagcaaaaagtagttttttaggtacattgaataattaatgta 19790781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 427
Target Start/End: Original strand, 612556 - 612620
Alignment:
Q  362 gtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||| |||| ||||||||||||| |||| ||||  |||||| || ||||||||||||||||||    
T  612556 gtactccattcgatcacatttataagaaaaa-ataatattttagatttattgaataactaatgtat 612620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 437
Target Start/End: Original strand, 9502876 - 9502941
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata 437  Q
    |||||||||||||||| |||| || ||||||||| |||||| || | ||||||||| ||| |||||    
T  9502876 cggtcacatttataagtaaaaaatcactttttagattcattcaacacctaatgtatttggtctata 9502941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 427
Target Start/End: Original strand, 37914524 - 37914589
Alignment:
Q  362 gtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||| | ||||||||||| ||| ||||| | |||||||||  ||||||| |||||||||||||    
T  37914524 gtactccctccggtcacatttctaaacaaaaaacaactttttaaattcattggataactaatgtat 37914589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 105507 - 105439
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatat 440  Q
    ||||||| |||||||||||||  | |||||||||||||||| ||||  | |||||| ||| ||||||||    
T  105507 cggtcacttttataagcaaaagttgactttttaggttcattcaatacattatgtatgtggtctatatat 105439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 8036531 - 8036595
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| |||||||||  |||||||||||   | | |||||||||||||||||||||| ||||||    
T  8036531 tactcccttcggtcactattataagcaaatatttattttttaggttcattgaataactgatgtat 8036595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 11534890 - 11534822
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    |||| ||||||||| ||||| | || ||||||| |||||||||||  |||||||| || ||||||||||    
T  11534890 ggtcgcatttataaacaaaatacaattttttagattcattgaatatttaatgtatctgacctatatata 11534822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 407
Target Start/End: Complemental strand, 16867763 - 16867719
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggt 407  Q
    |||||| |||| |||||||||||||||||| | ||||||||||||    
T  16867763 tactcccttcgatcacatttataagcaaaaaacaactttttaggt 16867719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 438
Target Start/End: Original strand, 39682607 - 39682679
Alignment:
Q  366 tcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatat 438  Q
    ||||||| |||||  ||||||| |||| || | |||||||||||||||||||| | |||||| ||| ||||||    
T  39682607 tcctttctgtcactattataagtaaaaaattattttttaggttcattgaataaatgatgtatgtggtctatat 39682679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 437
Target Start/End: Original strand, 42896175 - 42896215
Alignment:
Q  397 actttttaggttcattgaataactaatgtatatggcctata 437  Q
    |||||||||||||||||||||||| |||||| ||| |||||    
T  42896175 actttttaggttcattgaataactgatgtatctggtctata 42896215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 427
Target Start/End: Original strand, 50561069 - 50561117
Alignment:
Q  379 atttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||| |||| ||||||| |||||||| || |||||||||    
T  50561069 atttataagcaaaaaataattttttagattcattgagtatctaatgtat 50561117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 427
Target Start/End: Original strand, 52417690 - 52417745
Alignment:
Q  371 tcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||| ||||||||| |||| |||| |||||| |||||| |||||||||||||||    
T  52417690 tcggtcaaatttataagtaaaaaataa-tttttaagttcatcgaataactaatgtat 52417745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 28499777 - 28499841
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| | ||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  28499777 tactccctccggtcacatttataagcaaaaaataattttttagattcattgaataactaatgtat 28499841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 427
Target Start/End: Original strand, 18550982 - 18551036
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||||||| |||| ||||| |||||||||||||||||||||    
T  18550982 ggtcacatttataagcaaaacacaactgtttagattcattgaataactaatgtat 18551036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 441
Target Start/End: Original strand, 35463964 - 35464026
Alignment:
Q  379 atttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||  || |||||||||    
T  35463964 atttataagcaaaaaataattttttaggttcattgaataactaatgtatccggtctatatata 35464026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 427
Target Start/End: Complemental strand, 28351080 - 28351025
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| |||||||||||||| | |||||||||| |||||||||||||||||||||    
T  28351080 cggtcatatttataagcaaaaaacaactttttagattcattgaataactaatgtat 28351025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 373 - 427
Target Start/End: Original strand, 16829208 - 16829261
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  16829208 ggtcacatttataagcaaaa-ataactttttaagttcattgaatatctaatgtat 16829261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 372 - 442
Target Start/End: Complemental strand, 17768143 - 17768073
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatatac 442  Q
    ||||||||| ||||||||||| || | |||||||||||||||||||  |||||||| ||| ||||||||||    
T  17768143 cggtcacatatataagcaaaaaattattttttaggttcattgaatacataatgtatttggtctatatatac 17768073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 373 - 427
Target Start/End: Complemental strand, 34445396 - 34445342
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||||||||| || |||||||||| || ||||||||||||||||||    
T  34445396 ggtcacatttataagcaaatcacaactttttagatttattgaataactaatgtat 34445342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 451
Target Start/End: Complemental strand, 12645493 - 12645405
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatatacacctaatac 451  Q
    |||||| | ||||||||| ||||||||||| |  |||||||| ||||||||||||  |||||||| ||| ||||||||| ||| |||||    
T  12645493 tactccatccggtcacatatataagcaaaaaaatactttttaagttcattgaatacataatgtatttggtctatatataaaccgaatac 12645405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 417
Target Start/End: Complemental strand, 14751272 - 14751216
Alignment:
Q  361 tgtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaata 417  Q
    |||||||| | ||||||||||||||||||||| | |||||||||||| |||||||||    
T  14751272 tgtactccctccggtcacatttataagcaaaaaacaactttttaggtacattgaata 14751216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 427
Target Start/End: Complemental strand, 43221694 - 43221642
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||| ||||||||||||||| |||||| || ||||||||    
T  43221694 tcacatttataagcaaaaaataactttttaggtttattgaaaaattaatgtat 43221642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 19087912 - 19087845
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatat 440  Q
    ||||||||||||||||||||    |||||||||||||||||||||  |||||||| ||| ||||||||    
T  19087912 ggtcacatttataagcaaaaatgtactttttaggttcattgaatacataatgtatttggtctatatat 19087845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 372 - 437
Target Start/End: Complemental strand, 35458262 - 35458197
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata 437  Q
    ||||||||| |||||||||||  ||||| |||||||| ||||||| ||||||||| |||| |||||    
T  35458262 cggtcacatatataagcaaaaagtaactatttaggtttattgaatgactaatgtacatggtctata 35458197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 372 - 437
Target Start/End: Complemental strand, 40773108 - 40773043
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata 437  Q
    ||||||||||||||||||||| |  |||||||||||||||| || | ||||||||| ||| |||||    
T  40773108 cggtcacatttataagcaaaaaaccactttttaggttcattcaacacctaatgtatttggtctata 40773043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 418
Target Start/End: Complemental strand, 5865987 - 5865931
Alignment:
Q  362 gtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataa 418  Q
    ||||||| | ||||||||||||||||||||| | |  ||||||||||||||||||||    
T  5865987 gtactccctccggtcacatttataagcaaaaaacacatttttaggttcattgaataa 5865931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 427
Target Start/End: Original strand, 18200668 - 18200720
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||||||||  ||| |||||| ||| ||||||||||||||||||    
T  18200668 tcacatttataagcaaaaattaattttttaagtttattgaataactaatgtat 18200720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 427
Target Start/End: Complemental strand, 32741445 - 32741393
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||| |||| |||||||||||||| ||||| || |||||    
T  32741445 tcacatttataagcaaaaaataattttttaggttcattaaataattattgtat 32741393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 11417513 - 11417458
Alignment:
Q  382 tataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata 437  Q
    ||||||||| |  ||| |||||||||||||||||| |||||||||||||| |||||    
T  11417513 tataagcaataagtaattttttaggttcattgaatgactaatgtatatggtctata 11417458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 418
Target Start/End: Original strand, 35458129 - 35458176
Alignment:
Q  371 tcggtcacatttataagcaaaacataactttttaggttcattgaataa 418  Q
    ||||||||||||||||| ||||  |||||||||| |||||||||||||    
T  35458129 tcggtcacatttataaggaaaaattaactttttaagttcattgaataa 35458176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 16829333 - 16829268
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    ||||| |||||||||||||| ||   ||||||||||||| ||||||||||||||| || ||| ||||||    
T  16829333 ggtcatatttataagcaaaaaat---tttttaggttcatcgaataactaatgtatctgacctttatata 16829268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 427
Target Start/End: Complemental strand, 22398192 - 22398126
Alignment:
Q  361 tgtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| |||||| ||| ||||||||  |||| | |||||||||| |||||||||||| ||||||||    
T  22398192 tgtacttctttcgatcatatttataaataaaatacaactttttagattcattgaataattaatgtat 22398126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 427
Target Start/End: Original strand, 34445266 - 34445320
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| ||||||||||||| | |||||||||||||||| |||||| ||| ||||    
T  34445266 ggtcacttttataagcaaaaaacaactttttaggttcatggaataattaaggtat 34445320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 7065719 - 7065666
Alignment:
Q  374 gtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||||   |||||||||  |||||||||||| ||||||||    
T  7065719 gtcacatttataagcaaaaatcaactttttaaattcattgaataattaatgtat 7065666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 8850396 - 8850331
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatat 440  Q
    ||||||||||||| ||||    |||||||||||||||||||||  |||||||| ||| ||||||||    
T  8850396 tcacatttataagtaaaaatgtactttttaggttcattgaatacataatgtatttggtctatatat 8850331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 14751122 - 14751184
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| | ||||||||| |||||||||||  | ||||||||||| |||||||||| ||||||||    
T  14751122 tactccctccggtcacatgtataagcaaaa--tgactttttaggtgcattgaataattaatgtat 14751184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 15474421 - 15474466
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaata 417  Q
    |||||||||||||||| |||| |||||||||||| | |||||||||    
T  15474421 cggtcacatttataagaaaaaaataactttttagatacattgaata 15474466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 37514295 - 37514242
Alignment:
Q  374 gtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| ||||| ||||||  |||||||| || |||||||||||||||||||||    
T  37514295 gtcacaattatatgcaaaaattaacttttcagattcattgaataactaatgtat 37514242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 441
Target Start/End: Complemental strand, 39063232 - 39063164
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgta--tatggcctatatata 441  Q
    |||||||||||||||||| |||| ||||||| || ||| || ||||||||||  ||||| |||||||||    
T  39063232 tcacatttataagcaaaatataattttttagatttattaaacaactaatgtatttatggtctatatata 39063164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 427
Target Start/End: Original strand, 1249115 - 1249166
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||| |||| | ||||||||||||||||| |||| |||||||||    
T  1249115 tcacatttataagaaaaa-acaactttttaggttcattaaatagctaatgtat 1249166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 451
Target Start/End: Original strand, 8850259 - 8850347
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatatacacctaatac 451  Q
    |||||| | ||||||||||||||||||||| || | ||||| | |||||| ||||  |||||||| ||| | ||||||| ||| |||||    
T  8850259 tactccctccggtcacatttataagcaaaaaatcatttttttgattcattcaatatttaatgtatttggtcaatatatagaccaaatac 8850347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 430
Target Start/End: Complemental strand, 14958973 - 14958921
Alignment:
Q  378 catttataagcaaaacataactttttaggttcattgaataactaatgtatatg 430  Q
    |||| |||||||||| | | |||||||  ||||||||||||||||||||||||    
T  14958973 cattcataagcaaaaaacatctttttaaattcattgaataactaatgtatatg 14958921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 19087773 - 19087837
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| ||||||||||||||||||||||| |  | ||||||  |||||||||||  ||||||||    
T  19087773 tactcccttcggtcacatttataagcaaaaaaatattttttatattcattgaatacttaatgtat 19087837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 30046452 - 30046388
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||| || |||| |||||||||||||||| || || |||||| | |||||||||| ||||||||    
T  30046452 tactcattccggttacatttataagcaaaaaatcacattttagatacattgaataattaatgtat 30046388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 427
Target Start/End: Complemental strand, 30916352 - 30916320
Alignment:
Q  395 taactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||| ||||||||||||||    
T  30916352 taactttttaggttcattcaataactaatgtat 30916320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 474
Target Start/End: Complemental strand, 35464081 - 35463985
Alignment:
Q  379 atttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatatacacctaatac-ttagttattcaagtaacctaaaa 474  Q
    ||||||||||||||   |||||||||||||| |||| || ||||||||| |  | |||||||| |||  |||| ||||||||||||  |||||||||    
T  35464081 atttataagcaaaaggcaactttttaggttctttgagtagctaatgtatctaacatatatatagaccggatacattagttattcaatgaacctaaaa 35463985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 40772964 - 40773028
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| | |||||||||||||||| |||| | || |||||||||||||| ||||  ||||||||    
T  40772964 tactccctccggtcacatttataagtaaaaaacaattttttaggttcatttaatacttaatgtat 40773028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 431
Target Start/End: Complemental strand, 33508665 - 33508609
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatgg 431  Q
    |||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||    
T  33508665 tcacatttataagcaaaacacaacttgttagattcattgaataactaatgtatatgg 33508609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 427
Target Start/End: Complemental strand, 23614522 - 23614456
Alignment:
Q  361 tgtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||||| |||||||||||||||| |  ||||||||||||||||||| | |||||||||    
T  23614522 tgtactcctttcggttacatttataagcaaaaaaccactttttaggttcattgaacacctaatgtat 23614456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 437
Target Start/End: Original strand, 38562121 - 38562195
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata 437  Q
    |||||| ||||||||||||||||||||||| | ||||| |||| | |||||||||| ||||||||||| ||||||    
T  38562121 tactcccttcggtcacatttataagcaaaaaacaacttgttagatacattgaataattaatgtatatgtcctata 38562195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 431
Target Start/End: Original strand, 6371919 - 6371978
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatgg 431  Q
    ||||| ||||||||||||||| || ||||||||||| |||||||||| ||||||||||||    
T  6371919 cggtcccatttataagcaaaaaatgactttttaggtacattgaataattaatgtatatgg 6371978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 427
Target Start/End: Complemental strand, 39993178 - 39993123
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||| |||| |||||||||||| |||||||||||| ||||||||    
T  39993178 cggtcacatttataagtaaaaaataactttttagattcattgaataattaatgtat 39993123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 23673490 - 23673424
Alignment:
Q  374 gtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatat 440  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||| |||||||| || | |||||||    
T  23673490 gtcacatttataagcaaaaaataactttttaggtatattgaataattaatgtatctgacatatatat 23673424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 424
Target Start/End: Original strand, 33508527 - 33508588
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatg 424  Q
    |||||||||| | ||||||||||||||||| | || ||||||||| ||||||||||||||||    
T  33508527 tactcctttcagacacatttataagcaaaaaacaattttttaggtacattgaataactaatg 33508588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 427
Target Start/End: Original strand, 7277424 - 7277476
Alignment:
Q  376 cacatttataagcaaaacat-aactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||||||| |  ||||||||||||||||||||||||||||||||    
T  7277424 cacatttataagcaaaaaaacaactttttaggttcattgaataactaatgtat 7277476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 20291911 - 20291863
Alignment:
Q  379 atttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||| |||||||||||| || ||||||||||||||||||    
T  20291911 atttataagcaaaaaataactttttagatttattgaataactaatgtat 20291863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 417
Target Start/End: Complemental strand, 27990411 - 27990367
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaata 417  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  27990411 ggtcacatttataagcaaaacactactttttaggttcattgaata 27990367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 361 - 427
Target Start/End: Complemental strand, 8679091 - 8679024
Alignment:
Q  361 tgtactcctttcggtcacatttataagc-aaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||| | ||||||||||||||||| |||| |||| ||||||||| ||||||||| |||||||||    
T  8679091 tgtactccctccggtcacatttataagcaaaaaaataattttttaggtacattgaatacctaatgtat 8679024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 427
Target Start/End: Complemental strand, 10065196 - 10065147
Alignment:
Q  378 catttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||||| || ||||||||||| |||||||||| ||||||||    
T  10065196 catttataagcaaaaaatgactttttaggtacattgaataattaatgtat 10065147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 372 - 437
Target Start/End: Complemental strand, 32125474 - 32125409
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctata 437  Q
    |||||| ||||||||||||||    ||||||||||||||||||||| ||||||||| ||| |||||    
T  32125474 cggtcatatttataagcaaaaatctactttttaggttcattgaatatctaatgtatgtggtctata 32125409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 6372060 - 6371996
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||| | |||| |||||||||||||| | || ||||||||| |||| ||||||||||||||    
T  6372060 tactccttccagtcatatttataagcaaaaaacaattttttaggtacatttaataactaatgtat 6371996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 10065061 - 10065125
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| | ||||||||||||||||||||| | |||||||||||| |||  ||||| ||||||||    
T  10065061 tactccctccggtcacatttataagcaaaaaacaactttttaggtacatccaataattaatgtat 10065125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 20291777 - 20291841
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||| |||| ||||||||||||||||||| | ||||||||| ||  ||| ||||||||||||||    
T  20291777 tactcatttcagtcacatttataagcaaaaaacaactttttaagtatattaaataactaatgtat 20291841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 429
Target Start/End: Complemental strand, 21208717 - 21208653
Alignment:
Q  365 ctcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatat 429  Q
    |||| |||||||||  |||||||||||| || | |||||||||||||||||||| | ||||||||    
T  21208717 ctcccttcggtcactattataagcaaaaaattattttttaggttcattgaataagtgatgtatat 21208653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 30920842 - 30920794
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaat 423  Q
    |||||||||||||||||| |||| |||||| ||| ||||||||||||||    
T  30920842 tcacatttataagcaaaaaataattttttaagtttattgaataactaat 30920794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 38562271 - 38562207
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| | ||||||||||||||||||||| | || ||||||| | |||||||||| ||||||||    
T  38562271 tactccctccggtcacatttataagcaaaaaacaattttttagatacattgaataattaatgtat 38562207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 51303799 - 51303863
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||| |||| ||| |||||  |||||||||||||| |||||||||||||| ||||||||| ||||    
T  51303799 tactacttttggttacattattaagcaaaacataaatttttaggttcattaaataactaacgtat 51303863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 52840263 - 52840327
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| | ||||||||||||||||||||| |||| |||||| || |||| ||||| ||||||||    
T  52840263 tactccctccggtcacatttataagcaaaaaataattttttaagtacattaaataattaatgtat 52840327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 426
Target Start/End: Original strand, 32125333 - 32125396
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgta 426  Q
    |||||||| |||||| |||||||||||||||   ||||||| |||||||||||||  |||||||    
T  32125333 tactccttccggtcatatttataagcaaaacgctacttttttggttcattgaatacttaatgta 32125396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 417
Target Start/End: Original strand, 52280874 - 52280916
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaata 417  Q
    ||||||||| ||||||||||  |||||||||||||||||||||    
T  52280874 tcacatttacaagcaaaacaatactttttaggttcattgaata 52280916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 451
Target Start/End: Complemental strand, 10350989 - 10350912
Alignment:
Q  375 tcacatttataagca-aaacataactttttaggttcattgaataactaatgtatatggcctatatatacacctaatac 451  Q
    ||||||||||||||| ||| |  ||| ||||| |||||| |||||||||||||| ||| || |||||||||| |||||    
T  10350989 tcacatttataagcagaaaaagtactatttagattcatttaataactaatgtatttggtctttatatacaccaaatac 10350912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 438
Target Start/End: Complemental strand, 20114174 - 20114133
Alignment:
Q  397 actttttaggttcattgaataactaatgtatatggcctatat 438  Q
    ||||||||| || |||||||||||||||||||||| ||||||    
T  20114174 actttttagattaattgaataactaatgtatatggtctatat 20114133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 438
Target Start/End: Original strand, 48601109 - 48601178
Alignment:
Q  370 ttcggtcacatttataagcaaaaca-taactttttaggttcattgaataactaatgtatatggcctatat 438  Q
    ||||||||||||||||| ||||| | ||| ||||||  || |||||||||||||||||| || |||||||    
T  48601109 ttcggtcacatttataaacaaaaaactaattttttatatttattgaataactaatgtatctgacctatat 48601178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 392
Target Start/End: Original strand, 54918943 - 54918972
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaa 392  Q
    ||||||||||||||||||||||||||||||    
T  54918943 tactcctttcggtcacatttataagcaaaa 54918972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 441
Target Start/End: Complemental strand, 5535840 - 5535780
Alignment:
Q  381 ttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    ||||||||||||  | |||| ||||||||||| ||||||| |||||| ||| |||||||||    
T  5535840 ttataagcaaaaattgacttgttaggttcattcaataactgatgtatgtggtctatatata 5535780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 22235405 - 22235341
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||| | |||||||  |||||||||||| || || |||||| |||||||||||||| ||||||    
T  22235405 tactccctccggtcactattataagcaaaaaatcacattttagattcattgaataactgatgtat 22235341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 24099654 - 24099598
Alignment:
Q  395 taactttttaggttcattgaataactaatgtatatggcctatatatacacctaatac 451  Q
    ||||||||||||||||| |||||| |||| ||| || |||||||||| |||| ||||    
T  24099654 taactttttaggttcatcgaataaataatatatttgacctatatatagacctgatac 24099598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 52673743 - 52673679
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||| ||||||||||  ||||||||||||  | ||||||||| | |||||||||| ||||||||    
T  52673743 tactcatttcggtcactattataagcaaaatttcactttttagatacattgaataattaatgtat 52673679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 374 - 425
Target Start/End: Original strand, 33072623 - 33072674
Alignment:
Q  374 gtcacatttataagcaaaacataactttttaggttcattgaataactaatgt 425  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  33072623 gtcacatttacaagcaaaaaataactttttaggttcattgaataactaatgt 33072674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 18147813 - 18147870
Alignment:
Q  370 ttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||| ||||||||||| |||||| | ||||||||||||||||||||||||||||||||    
T  18147813 ttcgatcacatttatatgcaaaaaaaaactttttaggttcattgaataactaatgtat 18147870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 373 - 427
Target Start/End: Complemental strand, 6590918 - 6590864
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||||| || ||||||||||| |||||||||| ||||||||    
T  6590918 ggtcacatttataagcaaaaaattactttttaggtacattgaataattaatgtat 6590864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 373 - 427
Target Start/End: Original strand, 27988084 - 27988138
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||||| | ||||||||| ||||||||||||| ||||||||    
T  27988084 ggtcacatttataagcaaaaaacaactttttaagttcattgaataagtaatgtat 27988138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 373 - 427
Target Start/End: Original strand, 28045386 - 28045440
Alignment:
Q  373 ggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||||| | ||||||||| ||||||||||||| ||||||||    
T  28045386 ggtcacatttataagcaaaaaacaactttttaagttcattgaataagtaatgtat 28045440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 438
Target Start/End: Complemental strand, 9503675 - 9503612
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatat 438  Q
    |||||||||||| ||||| |||||||||||| |||||||||||  |||||||| ||| ||||||    
T  9503675 tcacatttataaacaaaaaataactttttagattcattgaatatttaatgtatttggtctatat 9503612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 361 - 436
Target Start/End: Original strand, 12354444 - 12354519
Alignment:
Q  361 tgtactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctat 436  Q
    |||||||| |||||||||||||||||||||||   ||||||||||  |||||||||  ||||||||| ||| ||||    
T  12354444 tgtactcccttcggtcacatttataagcaaaaatcaactttttagactcattgaatgtctaatgtatttggtctat 12354519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 441
Target Start/End: Original strand, 14578505 - 14578576
Alignment:
Q  370 ttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    |||||| ||||||||||||||||  |||  ||||||||||||||||||| |||||||| ||  |||||||||    
T  14578505 ttcggttacatttataagcaaaaattaatattttaggttcattgaataattaatgtatctgatctatatata 14578576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 4578323 - 4578269
Alignment:
Q  374 gtcacatttataagcaaaaca-taactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||||||||| | | ||||||||||||||||||||| |||||||||    
T  4578323 gtcacatttataagcaaaaaaatcactttttaggttcattgaatacctaatgtat 4578269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 30557062 - 30557009
Alignment:
Q  374 gtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||| | ||| | |||||||||||||||||||||||| |||||||    
T  30557062 gtcacatttataaacgaaaaacaactttttaggttcattgaataaccaatgtat 30557009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 6649202 - 6649154
Alignment:
Q  379 atttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||| || ||||||||||| |||||||||| ||||||||    
T  6649202 atttataagcaaaaaatgactttttaggtacattgaataattaatgtat 6649154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 427
Target Start/End: Complemental strand, 6616646 - 6616591
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||||||||||| || | ||||||||| ||| |||||| ||||||||    
T  6616646 cggtcacatttataagcaaaaaatgattttttaggtacatggaataattaatgtat 6616591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 427
Target Start/End: Original strand, 14113217 - 14113272
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||| ||||||||| |||||||||||||| |||  ||||| ||||||||    
T  14113217 cggtcacatttctaagcaaaaaataactttttaggtacatccaataattaatgtat 14113272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 441
Target Start/End: Complemental strand, 14578636 - 14578569
Alignment:
Q  374 gtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    ||||||||||||||||||| | |||||||||| ||||||||| || |||| |||  || |||||||||    
T  14578636 gtcacatttataagcaaaatacaactttttagattcattgaacaaataatatatcgggtctatatata 14578569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 441
Target Start/End: Complemental strand, 30114884 - 30114809
Alignment:
Q  363 tactcctttcggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtatatggcctatatata 441  Q
    ||||||||||||  | |||||||||||||| |||  ||||||  ||||||||||||||||||||| ||| |||||||||    
T  30114884 tactcctttcgg--atatttataagcaaaaaatat-tttttaaattcattgaataactaatgtatttggtctatatata 30114809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 427
Target Start/End: Complemental strand, 27988210 - 27988160
Alignment:
Q  378 catttataagcaaaacat-aactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||  |||||||||| |||||||||||| ||||||||    
T  27988210 catttataagcaaaacaacaactttttagattcattgaataattaatgtat 27988160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 427
Target Start/End: Complemental strand, 28045512 - 28045462
Alignment:
Q  378 catttataagcaaaacat-aactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||  |||||||||| |||||||||||| ||||||||    
T  28045512 catttataagcaaaacaacaactttttagattcattgaataattaatgtat 28045462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 8337266 - 8337233
Alignment:
Q  385 aagcaaaacataactttttaggttcattgaataa 418  Q
    |||||||||| |||||||||||||||||||||||    
T  8337266 aagcaaaacaaaactttttaggttcattgaataa 8337233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 438
Target Start/End: Original strand, 10396825 - 10396866
Alignment:
Q  397 actttttaggttcattgaataactaatgtatatggcctatat 438  Q
    ||||||||| || |||||||||||||||||||||| ||||||    
T  10396825 actttttagattaattgaataactaatgtatatggtctatat 10396866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 421
Target Start/End: Original strand, 12966071 - 12966116
Alignment:
Q  376 cacatttataagcaaaacataactttttaggttcattgaataacta 421  Q
    ||||||||||| ||||| |||| |||||||||||||||||| ||||    
T  12966071 cacatttataaacaaaaaataattttttaggttcattgaattacta 12966116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 40737956 - 40737903
Alignment:
Q  374 gtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||| |||||||||||||| |||  ||||||||| |||||||||| ||||||||    
T  40737956 gtcatatttataagcaaaaaatagttttttaggtacattgaataattaatgtat 40737903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 427
Target Start/End: Complemental strand, 9503584 - 9503532
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||| | |||||||| | |||||||||||  ||||||||    
T  9503584 tcacatttataagcaaaaaacaactttttcgattcattgaatatttaatgtat 9503532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 375 - 427
Target Start/End: Original strand, 5827 - 5879
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    |||||||||||||||||| || ||||||||||| |||||||||||||||||||    
T  5827 tcacatttataagcaaaaaatgactttttaggtacattgaataactaatgtat 5879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 320804 - 320756
Alignment:
Q  375 tcacatttataagcaaaacataactttttaggttcattgaataactaat 423  Q
    |||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  320804 tcacatttataagcaaaacacaactttttagattcattaaataactaat 320756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 427
Target Start/End: Original strand, 4716 - 4771
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||| || |||||||||| |||||||||  |||||||||||||||||||||    
T  4716 cggtcacatatacaagcaaaacacaactttttaaattcattgaataactaatgtat 4771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 427
Target Start/End: Complemental strand, 5932 - 5877
Alignment:
Q  372 cggtcacatttataagcaaaacataactttttaggttcattgaataactaatgtat 427  Q
    ||||||||||||||||||||| || | ||||||||| ||| |||||| ||||||||    
T  5932 cggtcacatttataagcaaaaaatgattttttaggtacatggaataattaatgtat 5877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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