View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5998_low_4 (Length: 321)

Name: NF5998_low_4
Description: NF5998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5998_low_4
NF5998_low_4
[»] chr8 (24 HSPs)
chr8 (36-258)||(28218963-28219183)
chr8 (133-206)||(33472279-33472352)
chr8 (129-215)||(8885227-8885313)
chr8 (129-213)||(11698093-11698177)
chr8 (141-213)||(42280668-42280740)
chr8 (129-212)||(36980867-36980950)
chr8 (129-215)||(3094983-3095069)
chr8 (130-215)||(10840528-10840613)
chr8 (157-213)||(27927727-27927783)
chr8 (129-192)||(28423719-28423782)
chr8 (157-215)||(14163832-14163890)
chr8 (129-215)||(17119655-17119740)
chr8 (141-215)||(40994980-40995054)
chr8 (129-214)||(28917073-28917158)
chr8 (129-213)||(6395382-6395466)
chr8 (129-205)||(7981814-7981890)
chr8 (129-213)||(34853626-34853710)
chr8 (158-213)||(4259459-4259514)
chr8 (134-206)||(31234605-31234678)
chr8 (129-215)||(31519669-31519753)
chr8 (159-213)||(9073847-9073901)
chr8 (129-215)||(40328196-40328281)
chr8 (176-204)||(4959270-4959298)
chr8 (167-215)||(27234598-27234646)
[»] chr3 (36 HSPs)
chr3 (129-212)||(51258702-51258785)
chr3 (129-212)||(29048628-29048711)
chr3 (129-215)||(47302317-47302403)
chr3 (129-215)||(51816512-51816598)
chr3 (129-215)||(2358397-2358483)
chr3 (129-215)||(35142371-35142457)
chr3 (129-215)||(28873304-28873390)
chr3 (129-215)||(34821118-34821204)
chr3 (129-215)||(35345684-35345770)
chr3 (157-213)||(29036130-29036186)
chr3 (142-213)||(500963-501034)
chr3 (129-215)||(4394277-4394363)
chr3 (129-215)||(14828691-14828777)
chr3 (129-207)||(40062678-40062756)
chr3 (157-215)||(41300936-41300994)
chr3 (157-215)||(50716579-50716637)
chr3 (157-215)||(50796210-50796268)
chr3 (140-201)||(38977537-38977598)
chr3 (158-215)||(46622570-46622627)
chr3 (140-204)||(3351852-3351916)
chr3 (173-213)||(30721611-30721651)
chr3 (129-213)||(51493103-51493187)
chr3 (129-213)||(51540404-51540488)
chr3 (136-206)||(43471466-43471536)
chr3 (129-215)||(46625029-46625114)
chr3 (175-215)||(39150146-39150186)
chr3 (134-206)||(45244600-45244671)
chr3 (175-215)||(47123328-47123368)
chr3 (175-215)||(47130694-47130734)
chr3 (158-213)||(3902583-3902638)
chr3 (129-192)||(43472766-43472829)
chr3 (133-215)||(34009869-34009951)
chr3 (131-189)||(45711886-45711944)
chr3 (173-215)||(47769604-47769646)
chr3 (140-213)||(33439496-33439569)
chr3 (180-213)||(35141486-35141519)
[»] chr6 (22 HSPs)
chr6 (129-215)||(237096-237182)
chr6 (129-215)||(2812997-2813083)
chr6 (157-215)||(5699924-5699982)
chr6 (157-215)||(9905389-9905447)
chr6 (129-215)||(17264707-17264793)
chr6 (141-215)||(21514806-21514880)
chr6 (157-215)||(4508077-4508135)
chr6 (157-215)||(29630739-29630797)
chr6 (157-215)||(2539777-2539835)
chr6 (157-215)||(3717057-3717115)
chr6 (129-215)||(4655636-4655722)
chr6 (157-215)||(5639187-5639245)
chr6 (173-215)||(7413109-7413151)
chr6 (129-215)||(14587336-14587422)
chr6 (157-206)||(1945366-1945415)
chr6 (129-206)||(24604145-24604222)
chr6 (173-213)||(16450560-16450600)
chr6 (173-215)||(7416128-7416170)
chr6 (129-202)||(14037753-14037826)
chr6 (129-214)||(3365957-3366042)
chr6 (173-213)||(8120153-8120193)
chr6 (134-202)||(17501291-17501358)
[»] chr1 (29 HSPs)
chr1 (129-213)||(24472605-24472689)
chr1 (129-200)||(34006559-34006630)
chr1 (134-206)||(800677-800748)
chr1 (157-213)||(6099718-6099774)
chr1 (157-213)||(6099898-6099954)
chr1 (140-215)||(28866405-28866480)
chr1 (129-215)||(18583319-18583405)
chr1 (129-215)||(27795128-27795214)
chr1 (131-205)||(38131185-38131259)
chr1 (129-201)||(8704307-8704378)
chr1 (134-206)||(9445973-9446044)
chr1 (129-213)||(40907711-40907795)
chr1 (157-213)||(33611187-33611243)
chr1 (129-213)||(41584442-41584526)
chr1 (131-215)||(42546268-42546351)
chr1 (129-213)||(45046627-45046711)
chr1 (148-215)||(41584356-41584423)
chr1 (134-205)||(43318859-43318929)
chr1 (173-215)||(3561110-3561152)
chr1 (129-203)||(26230338-26230412)
chr1 (157-215)||(38885539-38885597)
chr1 (173-215)||(40650479-40650521)
chr1 (157-215)||(49677789-49677847)
chr1 (177-215)||(52744618-52744656)
chr1 (129-213)||(6223530-6223613)
chr1 (129-215)||(49786566-49786652)
chr1 (175-215)||(44938074-44938114)
chr1 (177-213)||(45567679-45567715)
chr1 (176-204)||(52743860-52743888)
[»] chr2 (30 HSPs)
chr2 (129-212)||(38065350-38065433)
chr2 (148-214)||(15994890-15994956)
chr2 (129-215)||(25217544-25217630)
chr2 (129-215)||(34517401-34517487)
chr2 (129-215)||(44465510-44465596)
chr2 (134-215)||(17133028-17133109)
chr2 (129-206)||(30763948-30764025)
chr2 (129-213)||(42894675-42894759)
chr2 (148-215)||(39447474-39447541)
chr2 (157-215)||(33452212-33452270)
chr2 (157-213)||(17474570-17474626)
chr2 (130-212)||(35251231-35251313)
chr2 (157-215)||(41854673-41854731)
chr2 (157-213)||(32187656-32187712)
chr2 (160-215)||(41202959-41203014)
chr2 (133-212)||(45293931-45294010)
chr2 (129-215)||(5507718-5507804)
chr2 (131-213)||(33440282-33440364)
chr2 (161-215)||(42604796-42604850)
chr2 (129-214)||(11457250-11457335)
chr2 (157-206)||(41510208-41510257)
chr2 (173-213)||(16750216-16750256)
chr2 (129-213)||(18204864-18204948)
chr2 (157-213)||(24477043-24477099)
chr2 (159-215)||(27670824-27670880)
chr2 (137-215)||(12885272-12885350)
chr2 (37-74)||(38066798-38066835)
chr2 (129-206)||(38308611-38308688)
chr2 (178-215)||(41204267-41204304)
chr2 (134-202)||(9847297-9847364)
[»] chr7 (31 HSPs)
chr7 (129-213)||(3304528-3304612)
chr7 (129-213)||(9152089-9152173)
chr7 (129-215)||(19818678-19818763)
chr7 (129-215)||(42925415-42925501)
chr7 (129-203)||(43186083-43186157)
chr7 (129-213)||(7115046-7115130)
chr7 (134-206)||(16278316-16278388)
chr7 (129-212)||(8155197-8155280)
chr7 (157-215)||(33573823-33573881)
chr7 (129-215)||(47202785-47202871)
chr7 (158-215)||(26554938-26554995)
chr7 (129-213)||(6466914-6466997)
chr7 (129-213)||(37518040-37518124)
chr7 (148-215)||(47239493-47239560)
chr7 (143-214)||(48705775-48705846)
chr7 (129-215)||(19225373-19225459)
chr7 (157-215)||(24041972-24042030)
chr7 (129-215)||(31985292-31985378)
chr7 (157-215)||(36468314-36468372)
chr7 (129-205)||(36629501-36629577)
chr7 (129-215)||(43737380-43737466)
chr7 (129-213)||(42864878-42864963)
chr7 (129-213)||(1519012-1519096)
chr7 (134-206)||(8214378-8214450)
chr7 (129-215)||(24690111-24690194)
chr7 (129-215)||(31643338-31643424)
chr7 (174-215)||(28230267-28230308)
chr7 (129-206)||(37402757-37402834)
chr7 (38-74)||(16983871-16983907)
chr7 (132-212)||(30861384-30861464)
chr7 (139-215)||(32701035-32701111)
[»] chr5 (39 HSPs)
chr5 (129-213)||(6156991-6157075)
chr5 (129-213)||(32841748-32841832)
chr5 (129-215)||(14112125-14112211)
chr5 (129-215)||(26898578-26898664)
chr5 (129-215)||(31928900-31928986)
chr5 (129-212)||(26093719-26093802)
chr5 (129-215)||(7884454-7884540)
chr5 (157-215)||(12464893-12464951)
chr5 (129-211)||(37183560-37183642)
chr5 (129-215)||(39525036-39525122)
chr5 (134-206)||(16429244-16429316)
chr5 (148-215)||(31221115-31221181)
chr5 (129-215)||(11185962-11186048)
chr5 (129-202)||(5456316-5456389)
chr5 (136-213)||(21070632-21070709)
chr5 (157-213)||(15958037-15958093)
chr5 (158-206)||(28083160-28083208)
chr5 (129-213)||(33487871-33487955)
chr5 (157-213)||(40619762-40619818)
chr5 (140-215)||(26190097-26190172)
chr5 (129-215)||(38692557-38692644)
chr5 (129-215)||(20891872-20891958)
chr5 (173-215)||(27158388-27158430)
chr5 (140-206)||(27212974-27213040)
chr5 (175-213)||(33331447-33331485)
chr5 (129-215)||(41253566-41253652)
chr5 (156-213)||(19027336-19027393)
chr5 (134-215)||(38640898-38640978)
chr5 (173-205)||(5247283-5247315)
chr5 (173-205)||(6800725-6800757)
chr5 (131-199)||(31561706-31561774)
chr5 (133-192)||(8739080-8739139)
chr5 (174-213)||(15799530-15799569)
chr5 (134-213)||(38641106-38641184)
chr5 (138-213)||(43387937-43388011)
chr5 (157-203)||(38871959-38872005)
chr5 (183-215)||(12847717-12847749)
chr5 (174-202)||(41639286-41639314)
chr5 (165-205)||(42289752-42289792)
[»] chr4 (36 HSPs)
chr4 (130-213)||(42497712-42497795)
chr4 (129-215)||(29822886-29822972)
chr4 (129-215)||(46440047-46440133)
chr4 (141-215)||(53893801-53893875)
chr4 (130-215)||(49001330-49001415)
chr4 (129-205)||(7931962-7932038)
chr4 (129-213)||(25752220-25752304)
chr4 (157-215)||(14473990-14474048)
chr4 (129-215)||(38417097-38417182)
chr4 (129-215)||(54631267-54631353)
chr4 (148-215)||(38536496-38536563)
chr4 (129-215)||(8106700-8106786)
chr4 (129-215)||(18050964-18051050)
chr4 (129-215)||(23524093-23524179)
chr4 (157-215)||(48318839-48318897)
chr4 (140-213)||(19835837-19835910)
chr4 (133-213)||(4936499-4936579)
chr4 (129-205)||(25538763-25538839)
chr4 (129-215)||(2505805-2505892)
chr4 (140-215)||(32601155-32601230)
chr4 (174-213)||(47784344-47784383)
chr4 (157-215)||(6003448-6003506)
chr4 (129-215)||(25491170-25491256)
chr4 (157-215)||(34973198-34973256)
chr4 (157-215)||(40703998-40704056)
chr4 (173-215)||(49397361-49397403)
chr4 (132-213)||(27741890-27741971)
chr4 (173-213)||(31582207-31582247)
chr4 (129-213)||(48095639-48095723)
chr4 (141-197)||(52089572-52089628)
chr4 (129-215)||(5803203-5803290)
chr4 (140-211)||(6228592-6228663)
chr4 (176-215)||(20083323-20083362)
chr4 (129-215)||(3703030-3703116)
chr4 (129-202)||(372227-372300)
chr4 (129-202)||(47456911-47456984)
[»] scaffold0010 (1 HSPs)
scaffold0010 (129-213)||(140784-140868)
[»] scaffold0182 (1 HSPs)
scaffold0182 (157-215)||(23299-23357)
[»] scaffold0018 (1 HSPs)
scaffold0018 (129-215)||(174136-174222)
[»] scaffold0027 (1 HSPs)
scaffold0027 (158-206)||(141778-141826)
[»] scaffold0564 (1 HSPs)
scaffold0564 (157-205)||(4697-4745)
[»] scaffold0508 (1 HSPs)
scaffold0508 (174-213)||(3170-3209)
[»] scaffold0016 (1 HSPs)
scaffold0016 (134-205)||(205684-205754)
[»] scaffold0137 (1 HSPs)
scaffold0137 (140-206)||(9282-9347)
[»] scaffold0770 (1 HSPs)
scaffold0770 (173-213)||(4127-4167)
[»] scaffold0029 (1 HSPs)
scaffold0029 (173-213)||(102431-102471)


Alignment Details
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 36 - 258
Target Start/End: Complemental strand, 28219183 - 28218963
Alignment:
Q  36 ttggattttataatccgaaaacatcaaaaaatagtgtgttacttgatcaaattgctctgaaatttcaccnnnnnnnnnnnnnnnnnnnnnnnntcaagga 135  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||                        | |||||    
T  28219183 ttggattttataatccgaaaacctcaaaaaatagtgtgttacttgatcaaattgctctgaaatttcaccaaaaaaaatcagaaaaagaaaaaattaagga 28219084  T
Q  136 tcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttcannnnnnnnncaaggtatcat 235  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||         |||||||||||    
T  28219083 tcaagactctcgtagaatg-tcttcttacgggactatgcccctcaaaatccaaaattttatcgtttagacctatttttca-ttttttttcaaggtatcat 28218986  T
Q  236 attctccgaaaaattagcattag 258  Q
    |||||||||||||||||||||||    
T  28218985 attctccgaaaaattagcattag 28218963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 33472279 - 33472352
Alignment:
Q  133 ggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacc 206  Q
    |||||||||||||| |||||  | ||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  33472279 ggatcaagactcccttagaagagacttcttacgggactacgcccctcaaaattcaaaatttcatcgtttagacc 33472352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 8885313 - 8885227
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||||||||| || |||||||| |||||  |||||||||||||||||||| |||| |||||||| ||||||||    
T  8885313 tcaaggaccatgactcccgtagaagggacttcttacaggactccgcccctcaaaatccaaaattccatcatttagacccatttttca 8885227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 11698177 - 11698093
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| || ||||||| ||||| || | ||||||||||||  |||||||||||||||||||| ||||||||||||| ||||||    
T  11698177 tcaaggaccatgactcccatagaagggacgtcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccattttt 11698093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 42280740 - 42280668
Alignment:
Q  141 actcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||||| ||||| || |||||||| |||||  |||||||||||||||||||| ||||||||||||| ||||||    
T  42280740 actcccctagaagggacttcttacaggactccgcccctcaaaatccaaaattccatcgtttagacccattttt 42280668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 36980867 - 36980950
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttt 212  Q
    |||||||||||||||||| ||||| || |||||||| |||||  || ||||||||| ||||||  ||||||||||||| |||||    
T  36980867 tcaaggatcaagactcccctagaagggacttcttacaggactccgctcctcaaaattcaaaatcccatcgtttagacccatttt 36980950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 3094983 - 3095069
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||| ||| | || || |||||| ||||   ||||||||||||||||||||||||||||||||| ||||||||    
T  3094983 tcaaggaccatgactcccataggagggactacttacgcgactccacccctcaaaatccaaaatttcatcgtttagacccatttttca 3095069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 10840613 - 10840528
Alignment:
Q  130 caaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||| ||||||||||||| | | |||||||||||||   ||||||||||| ||||||  |||| |||||||| ||||||||    
T  10840613 caaggatcatgactcccgtagaaggatattcttacgggactccacccctcaaaattcaaaatcccatcttttagacccatttttca 10840528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 27927783 - 27927727
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||||||||   |||||| |||||||||||||||||||||||||| ||||||    
T  27927783 cttcttacgggactccacccctccaaatccaaaatttcatcgtttagacccattttt 27927727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 28423719 - 28423782
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatt 192  Q
    |||||||||||||||||||||||| || ||||||| ||||||    ||||||||||||||||||    
T  28423719 tcaaggatcaagactcccgtagaaaggacttcttatgggactccatccctcaaaatccaaaatt 28423782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 14163890 - 14163832
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||  ||||||||||||  |||||| |||| |||||||||||||||||    
T  14163890 cttcttacgggactccgcccctcaaaataaaaaattccatcatttagacctatttttca 14163832  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 17119740 - 17119655
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||  ||||||||||||    ||||||||||| | |  ||||||||||||||||||||||||||||||||| || |||||    
T  17119740 tcaaggatcattactcccgtagaagatacttcttacggg-caacacccctcaaaatccaaaatttcatcgtttagacccatctttca 17119655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 40994980 - 40995054
Alignment:
Q  141 actcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||||| ||  || ||||||||||  ||| |||||||||||||||| ||||||||||||  ||||||||    
T  40994980 actcccgtagaagggatttattacgggactccgcctctcaaaatccaaaattccatcgtttagacacatttttca 40995054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 28917073 - 28917158
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttc 214  Q
    ||||||| || ||||||| ||||| |  ||||||| ||||||  |||||||||||||||||||| ||| ||||||||  |||||||    
T  28917073 tcaaggaccatgactcccttagaaggaacttcttatgggactccgcccctcaaaatccaaaattccattgtttagactcatttttc 28917158  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 6395382 - 6395466
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||| || |||||||| ||||||  |  |||||||| |||  |||||||||||||||||||||  ||| |||||||||||||||    
T  6395382 tcaagtattaagactcctgtagaagagatttcttacgtgacgctgcccctcaaaatccaaaattcaatcatttagacctattttt 6395466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 7981814 - 7981890
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagac 205  Q
    ||||| |||||||||||| ||||| ||  || |||  |||||  |||||||||||||||||||| ||||||||||||    
T  7981814 tcaagcatcaagactcccttagaagggatttgttataggacttcgcccctcaaaatccaaaattccatcgtttagac 7981890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 34853626 - 34853710
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| || ||||||| ||||| || ||||||  ||||||  ||||||||||||  |||||| ||||||||||||| ||||||    
T  34853626 tcaaggaccatgactcccttagaaaggacttcttctgggactccgcccctcaaaataaaaaattccatcgtttagacccattttt 34853710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 4259514 - 4259459
Alignment:
Q  158 ttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||||||||||||  ||||||||||||||||||||  ||| |||||||| ||||||    
T  4259514 ttcttacgggactccgcccctcaaaatccaaaattctatcctttagacccattttt 4259459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 31234678 - 31234605
Alignment:
Q  134 gatcaagactcccgtagaatggtcttcttacg--ggactatgcccctcaaaatccaaaatttcatcgtttagacc 206  Q
    ||||||||||||| ||||| || |||||||||  |||||  |||| ||||||||||||||| |||||||||||||    
T  31234678 gatcaagactcccttagaagggacttcttacgcgggactccgccc-tcaaaatccaaaattccatcgtttagacc 31234605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 31519753 - 31519669
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||| ||| ||||| || | ||||||||||||   ||||||||||||||||||| ||| ||||||||| ||||||||    
T  31519753 tcaaggaccatgacacccttagaagggacgtcttacgggactc--cccctcaaaatccaaaattccattgtttagacccatttttca 31519669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 9073847 - 9073901
Alignment:
Q  159 tcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||||||  ||||||||||||||||||||  |||||||||| | ||||||    
T  9073847 tcttacgggactcagcccctcaaaatccaaaattctatcgtttagaaccattttt 9073901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 40328196 - 40328281
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||| |||||||||| ||    ||||||||||||||  |||||||||||||| ||||| ||||||| || || ||||||||    
T  40328196 tcaaggatcatgactcccgtaaaagaaacttcttacgggactccgcccctcaaaatcc-aaattccatcgttaagtcccatttttca 40328281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 4959270 - 4959298
Alignment:
Q  176 cctcaaaatccaaaatttcatcgtttaga 204  Q
    |||||||||||||||||||||||||||||    
T  4959270 cctcaaaatccaaaatttcatcgtttaga 4959298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 27234646 - 27234598
Alignment:
Q  167 gactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||| |||| |||||||| |||||||||||| |||||||| ||||||||    
T  27234646 gactttgccactcaaaattcaaaatttcatcatttagacccatttttca 27234598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 51258702 - 51258785
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttt 212  Q
    |||||||||| ||||||||||||| || ||||||||||||||  |||||||||||||||||||||||||||||||||| |||||    
T  51258702 tcaaggatcatgactcccgtagaagggacttcttacgggactccgcccctcaaaatccaaaatttcatcgtttagacccatttt 51258785  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 29048628 - 29048711
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttt 212  Q
    |||||||||||||||||||||||| || ||| ||||||||||  |||||||||||||||||||| ||||||||||||| |||||    
T  29048628 tcaaggatcaagactcccgtagaaaggacttattacgggactccgcccctcaaaatccaaaattccatcgtttagacccatttt 29048711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 47302317 - 47302403
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||| ||||||| ||||| || |||||||||||||| ||||||||||||||||||||| ||| ||||||||| ||||||||    
T  47302317 tcaaggatcatgactcccatagaagggacttcttacgggactctgcccctcaaaatccaaaattccattgtttagacccatttttca 47302403  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 51816512 - 51816598
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||| || ||| |||||||| |||||||||||||| ||||||||||||| |||| |||||||||||||| | ||||||||    
T  51816512 tcaaggatcaaaacacccctagaatggacttcttacgggactctgcccctcaaaattcaaattttcatcgtttagatccatttttca 51816598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 2358483 - 2358397
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||| ||||| || ||||||||||||||| ||||||||||||| |||||| ||| ||||||||| ||||||||    
T  2358483 tcaaggaccatgactcccctagaagggacttcttacgggactacgcccctcaaaatctaaaattccattgtttagacccatttttca 2358397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 35142371 - 35142457
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||||||||| || ||||||||||| ||  |||||| ||||||||||||| ||||||||||||| ||||||||    
T  35142371 tcaaggaccatgactcccgtagaagggacttcttacggggctccgcccctaaaaatccaaaattccatcgtttagacccatttttca 35142457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 28873304 - 28873390
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||| |||||  | ||||||||||||||  |||||||||||||||||||| ||||||||||| | ||||||||    
T  28873304 tcaaggaacatgactcccctagaagagacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagatccatttttca 28873390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 34821204 - 34821118
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||| | ||||| || |||||||||||| |  |||||||||||||||||||| ||||||||||||| ||||||||    
T  34821204 tcaaggaccatgactctcatagaagggacttcttacgggagtccgcccctcaaaatccaaaattccatcgtttagacccatttttca 34821118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 35345770 - 35345684
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||| |||||||||| ||||||| || ||||| ||||||||  |||||||||||||||||||| || |||||| ||| ||||||||    
T  35345770 tcaagtatcaagactctcgtagaagggacttctaacgggactccgcccctcaaaatccaaaattccaccgtttaaacccatttttca 35345684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 29036130 - 29036186
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||||||| ||||||    
T  29036130 cttcctacgggactctgcccctcaaaatctaaaatttcatcgtttagacccattttt 29036186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 501034 - 500963
Alignment:
Q  142 ctcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||| ||||| || |||||||||| |||  |||||||||||||||||||| ||||||||||||| ||||||    
T  501034 ctcccatagaagggacttcttacggcactccgcccctcaaaatccaaaattccatcgtttagaccaattttt 500963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 4394277 - 4394363
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||||||||| |  ||| |||||||| |  |||||||||||||||||||| |||||||||||||  |||||||    
T  4394277 tcaaggaccatgactcccgtagaaggaactttttacgggattccgcccctcaaaatccaaaattccatcgtttagacccttttttca 4394363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 14828777 - 14828691
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||| |||  |||||  | |||||||| |||||  |||  ||||||||||||||| ||||||||||||||||||||||    
T  14828777 tcaaggatcaagattcctctagaagagacttcttacaggactccgcctttcaaaatccaaaattccatcgtttagacctatttttca 14828691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 40062678 - 40062756
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacct 207  Q
    |||||||||||||||| ||||||| || |||||||||| ||| || | ||||||||| |||||| |||| |||||||||    
T  40062678 tcaaggatcaagactctcgtagaagggacttcttacggtactttgtctctcaaaatctaaaattccatcatttagacct 40062756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 41300936 - 41300994
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||  |||| |||||||| |||||| ||||||||||||||||||||||    
T  41300936 cttcttacgggactccgcccatcaaaatcaaaaattccatcgtttagacctatttttca 41300994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 50716579 - 50716637
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||||| |  |||||||||||||||||||| |||| |||||||||||||||||    
T  50716579 cttcttacgggattccgcccctcaaaatccaaaattccatcctttagacctatttttca 50716637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 50796268 - 50796210
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||||| |  |||||||||||||||||||| |||| |||||||||||||||||    
T  50796268 cttcttacgggattccgcccctcaaaatccaaaattccatcctttagacctatttttca 50796210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 38977598 - 38977537
Alignment:
Q  140 gactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgttt 201  Q
    ||||||||||||| || ||||||  ||||||  |||||||||||||||||||||||||||||    
T  38977598 gactcccgtagaagggacttcttgtgggactccgcccctcaaaatccaaaatttcatcgttt 38977537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 46622627 - 46622570
Alignment:
Q  158 ttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||||||  |||||||| ||||||||||| ||||||||||||| ||||||||    
T  46622627 ttcttacgggactccgcccctcagaatccaaaattccatcgtttagacccatttttca 46622570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 3351916 - 3351852
Alignment:
Q  140 gactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttaga 204  Q
    ||||||||||||| || ||||||| ||||||  ||||||||||||| |||||| |||||||||||    
T  3351916 gactcccgtagaagggacttcttatgggactccgcccctcaaaatctaaaattccatcgtttaga 3351852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 30721651 - 30721611
Alignment:
Q  173 gcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  30721651 gcccctcaaaatccaaaatttcatcgtttagacccattttt 30721611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 51493103 - 51493187
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||||||||| |||||||| |  ||||||| ||||||    ||| ||||||  |||||||||||||||||||||||||||    
T  51493103 tcaaggatcaagacttccgtagaaagaacttcttaagggactccatcccacaaaatataaaatttcatcgtttagacctattttt 51493187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 51540488 - 51540404
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| || ||||||| ||||| || ||||| | |||| | ||||||||||||||||||| | ||||||||||||| ||||||    
T  51540488 tcaaggaccatgactcccttagaagggacttctcatgggattctgcccctcaaaatccaaaactccatcgtttagacccattttt 51540404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 43471536 - 43471466
Alignment:
Q  136 tcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacc 206  Q
    ||||||||| ||||||| |  ||||||||  ||||   |||||||||||||||||||||||||||||||||    
T  43471536 tcaagactctcgtagaaggaacttcttacaagactccacccctcaaaatccaaaatttcatcgtttagacc 43471466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 46625029 - 46625114
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||| ||||||||||||||||||| || ||| ||| | |||| |||| |||||| || |||||||||||||||||||  ||||||||    
T  46625029 tcaaagatcaagactcccgtagaagggactttttaagagactttgcctctcaaattc-aaaatttcatcgtttagactcatttttca 46625114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 39150146 - 39150186
Alignment:
Q  175 ccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||||||||||| ||||||||||||| ||||||||    
T  39150146 ccctcaaaatccaaaattccatcgtttagacccatttttca 39150186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 45244600 - 45244671
Alignment:
Q  134 gatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacc 206  Q
    ||||||||||||| ||||| || ||||||||| ||||  |||| ||||||||||||||| |||| ||||||||    
T  45244600 gatcaagactcccttagaaaggacttcttacgagactccgccc-tcaaaatccaaaattccatcatttagacc 45244671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 47123328 - 47123368
Alignment:
Q  175 ccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  47123328 ccctcaaaatccaaaatttcatcgttttgacccatttttca 47123368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 47130694 - 47130734
Alignment:
Q  175 ccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  47130694 ccctcaaaatccaaaatttcatcgttttgacccatttttca 47130734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 3902638 - 3902583
Alignment:
Q  158 ttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||||||||||||  ||||||||||||||||||||  |||||||||| | ||||||    
T  3902638 ttcttacgggactccgcccctcaaaatccaaaattcaatcgtttagatccattttt 3902583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 43472829 - 43472766
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatt 192  Q
    ||||||| || ||||||  ||||| || ||||||||||||||  ||||||||||||||||||||    
T  43472829 tcaaggaccatgactcctctagaagggacttcttacgggactccgcccctcaaaatccaaaatt 43472766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 34009951 - 34009869
Alignment:
Q  133 ggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||||  ||||||| || ||||||||| ||||  ||||| |||||||||||||| |||| |||| ||  ||||||||    
T  34009951 ggatcaagactttcgtagaagggacttcttacgtgactccgccccccaaaatccaaaattccatcatttatactcatttttca 34009869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 45711944 - 45711886
Alignment:
Q  131 aaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaa 189  Q
    |||||||||||||| | ||||| || ||||||||||||||   ||||||||||||||||    
T  45711944 aaggatcaagactctcttagaagggacttcttacgggactccacccctcaaaatccaaa 45711886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 47769604 - 47769646
Alignment:
Q  173 gcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||    
T  47769604 gcccctcaaaatccaaaatttcattgtttaaacccatttttca 47769646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 33439496 - 33439569
Alignment:
Q  140 gactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| || || || ||| |||||| |||  ||||| |||||||||||||| ||||||||||||| ||||||    
T  33439496 gactcccataaaagggacttgttacggaactccgccccacaaaatccaaaattccatcgtttagacccattttt 33439569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 35141486 - 35141519
Alignment:
Q  180 aaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||||||||||||||||| ||||||||||    
T  35141486 aaaatccaaaatttcatcgtttatacctattttt 35141519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 237096 - 237182
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| ||||| |||| ||||| |||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||    
T  237096 tcaaggaccaagaatcccttagaagggtcttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacctatttttca 237182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 2813083 - 2812997
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||| |||||||| ||||||| ||||||   ||||||||||||||||||||||||||||||||| ||||||||    
T  2813083 tcaaggaccatgactcccttagaatggacttcttatgggactccacccctcaaaatccaaaatttcatcgtttagacccatttttca 2812997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 5699924 - 5699982
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||    
T  5699924 cttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacctatttttca 5699982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 9905389 - 9905447
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||    
T  9905389 cttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacctatttttca 9905447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 17264707 - 17264793
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||| ||||| || ||||||||||||||  | |||||||||||||||||||||||||||||| | ||||||||    
T  17264707 tcaaggaccatgactcccctagaagggacttcttacgggacttcgtccctcaaaatccaaaatttcatcgtttagatccatttttca 17264793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 21514880 - 21514806
Alignment:
Q  141 actcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||| ||||| || ||||||||||||||  |||||||||||||||||||| ||||||||||||| ||||||||    
T  21514880 actcccttagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccatttttca 21514806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 4508135 - 4508077
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| ||||||  |||||||||||||||||||| ||||||||||||| ||||||||    
T  4508135 cttcttaagggactccgcccctcaaaatccaaaattccatcgtttagacccatttttca 4508077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 29630797 - 29630739
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||||||  ||||||||    
T  29630797 cttcttatgggaccctgcccctcaaaatccaaaatttcatcgtttagactcatttttca 29630739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 2539777 - 2539835
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||  ||||||||||||||||||||  |||||||||||  ||||||||    
T  2539777 cttcttacgggactccgcccctcaaaatccaaaattcaatcgtttagactcatttttca 2539835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 3717115 - 3717057
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||  |||||||||||||||||||| ||  ||||||||| ||||||||    
T  3717115 cttcttacgggactccgcccctcaaaatccaaaattccactgtttagacccatttttca 3717057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 4655722 - 4655636
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||||| |||||| |  ||||||||||||||  | || |||||||||||||||  || ||||||| | ||||||||    
T  4655722 tcaaggatcaagactcctgtagaaagtacttcttacgggacttcgtccttcaaaatccaaaattcaattgtttagatccatttttca 4655636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 5639187 - 5639245
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||| | | ||||||||    
T  5639187 cttcttacgggactccgcccctcaaaatccaaaattccatcgtttatatccatttttca 5639245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 7413109 - 7413151
Alignment:
Q  173 gcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    
T  7413109 gcccctcaaaatccaaaatttcatcgtttagacccattattca 7413151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 14587422 - 14587336
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| |||||||||| ||||| |  ||||||||||||||  ||| |||||||||||||||| ||| ||||| ||  ||||||||    
T  14587422 tcaaggaccaagactcccttagaaggaacttcttacgggactccgccactcaaaatccaaaattccattgtttaaactcatttttca 14587336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 1945415 - 1945366
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacc 206  Q
    ||||||||||||||  |||||||||||||||||||| || ||||||||||    
T  1945415 cttcttacgggactccgcccctcaaaatccaaaattccaacgtttagacc 1945366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 24604222 - 24604145
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacc 206  Q
    |||||||||| ||||||| ||||| || |||||| ||| |||  ||| |||||||||||||||| || ||||||||||    
T  24604222 tcaaggatcatgactcccttagaagggacttcttgcggaactccgcctctcaaaatccaaaattccaccgtttagacc 24604145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 16450560 - 16450600
Alignment:
Q  173 gcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  16450560 gcccatcaaaatccaaaattccatcgtttagacctattttt 16450600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 7416128 - 7416170
Alignment:
Q  173 gcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||||||||  |||||||||||| ||||||||    
T  7416128 gcccctcaaaatccaaaattcaatcgtttagacccatttttca 7416170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 14037826 - 14037753
Alignment:
Q  129 tcaaggatcaagactcc-cgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgttta 202  Q
    ||||||||||||||||| || | || || |||||||||||||| ||| ||||||||||||| ||| |||||||||    
T  14037826 tcaaggatcaagactccacggaaaa-ggacttcttacgggactctgctcctcaaaatccaacattccatcgttta 14037753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 3365957 - 3366042
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttc 214  Q
    |||||||| ||||||||  |||||  | ||||||||| ||||  | | ||||||||| |||||||||||||||||||  |||||||    
T  3365957 tcaaggattaagactcctctagaagagacttcttacgagactccgtcgctcaaaatctaaaatttcatcgtttagactcatttttc 3366042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 8120193 - 8120153
Alignment:
Q  173 gcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||||||||||||||  ||| |||||||||||||||    
T  8120193 gcccctcaaaatccaaaattctatcatttagacctattttt 8120153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 17501291 - 17501358
Alignment:
Q  134 gatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgttta 202  Q
    ||||||||||||  ||||| || ||| ||||||||||  |||  |||||||||||||||||||||||||    
T  17501291 gatcaagactcctttagaagggactttttacgggactccgcca-tcaaaatccaaaatttcatcgttta 17501358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 24472689 - 24472605
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||||||||||||||||| ||||| || |||||| |||||||  |||| ||||||||||||||||||||||||||||| ||||||    
T  24472689 tcaaggatcaagactcccatagaagggacttcttgcgggactccgcccttcaaaatccaaaatttcatcgtttagacccattttt 24472605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 34006559 - 34006630
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtt 200  Q
    |||||||||| ||||||||||||| || ||||||||||||||  | ||||||||||||||||||||||||||    
T  34006559 tcaaggatcatgactcccgtagaagggacttcttacgggactccgtccctcaaaatccaaaatttcatcgtt 34006630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 800748 - 800677
Alignment:
Q  134 gatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacc 206  Q
    ||||||||||||| ||||| || |||||||||||||| ||||| ||||||||||||||| |||||||||||||    
T  800748 gatcaagactcccttagaagggacttcttacgggactctgccc-tcaaaatccaaaattccatcgtttagacc 800677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 6099774 - 6099718
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||    
T  6099774 cttcttatgggactctgcccctcaaaatccaaaatttaatcgtttagacctattttt 6099718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 6099954 - 6099898
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||    
T  6099954 cttcttatgggactctgcccctcaaaatccaaaatttaatcgtttagacctattttt 6099898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 28866480 - 28866405
Alignment:
Q  140 gactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| ||||| |  |||| |||||||||  |||||||||||||||||||||||||||||||||| ||||||||    
T  28866480 gactcccttagaaggcacttcctacgggactccgcccctcaaaatccaaaatttcatcgtttagacccatttttca 28866405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 18583405 - 18583319
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||| |||||  | ||||||||||||||  |||||||||||||||||||| ||| ||||||||| ||||||||    
T  18583405 tcaaggaccacgactcccatagaagagacttcttacgggactccgcccctcaaaatccaaaattccattgtttagacccatttttca 18583319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 27795128 - 27795214
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||| |||||  ||||||  | |||||||| |||||  ||||||||||||||||||||||||||||||||||  |||||||    
T  27795128 tcaaggatcatgactcttgtagaagagacttcttacaggactccgcccctcaaaatccaaaatttcatcgtttagacccgtttttca 27795214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 38131185 - 38131259
Alignment:
Q  131 aaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagac 205  Q
    |||||||||||||||| || ||||  |||||| ||||||| ||||||||||||||||||| | ||||||||||||    
T  38131185 aaggatcaagactcccctaaaatgaacttctttcgggactctgcccctcaaaatccaaaactccatcgtttagac 38131259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 8704378 - 8704307
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgttt 201  Q
    ||||| || ||||||||| ||||| || |||||||||||||||  ||||||||||||||||||||||||||||    
T  8704378 tcaagcatgaagactccc-tagaagggacttcttacgggactacacccctcaaaatccaaaatttcatcgttt 8704307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 9446044 - 9445973
Alignment:
Q  134 gatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacc 206  Q
    ||||||||||||| ||||| ||  |||||||||||||  |||| |||||||||||||||||||||||||||||    
T  9446044 gatcaagactcccttagaagggatttcttacgggactccgccc-tcaaaatccaaaatttcatcgtttagacc 9445973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 40907795 - 40907711
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||||||||| ||||| | || || || ||||||| ||||||  |||||||||||||||||||| ||||||||||||| ||||||    
T  40907795 tcaaggatcatgactctcataaaagggacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacccattttt 40907711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 33611243 - 33611187
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||||||||| | |||||||||||||||||| ||| ||||||||| ||||||    
T  33611243 cttcttacgggactacgtccctcaaaatccaaaattccattgtttagacccattttt 33611187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 41584526 - 41584442
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| || ||||||| ||||| || ||||||||||||||  |||||||| |||| |||||| ||| ||||||||| ||||||    
T  41584526 tcaaggaccatgactcccatagaagggacttcttacgggactccgcccctcacaatctaaaattccattgtttagacccattttt 41584442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 42546268 - 42546351
Alignment:
Q  131 aaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||| || ||||||| ||||| |  ||||||||||||||  |||| ||||||||||||||| ||||||||||||| ||||||||    
T  42546268 aaggaccatgactcccttagaaggaacttcttacgggactccgccc-tcaaaatccaaaattccatcgtttagacccatttttca 42546351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 45046711 - 45046627
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| || ||||||| ||||| || ||||||| | ||||  |||||||||||||||||||| ||||||||||| | ||||||    
T  45046711 tcaaggaccatgactcccttagaagggacttcttatgagactccgcccctcaaaatccaaaattccatcgtttagatccattttt 45046627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 41584423 - 41584356
Alignment:
Q  148 tagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||| || ||||||||||||||  ||||||||||||| |||||| ||| ||||||||| ||||||||    
T  41584423 tagaagggacttcttacgggactccgcccctcaaaatctaaaattccattgtttagacccatttttca 41584356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 43318929 - 43318859
Alignment:
Q  134 gatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagac 205  Q
    |||||||| |||| |||||  | |||||||||||||| ||||| |||||||||||||||||||| |||||||    
T  43318929 gatcaagattcccttagaagagacttcttacgggactctgccc-tcaaaatccaaaatttcatcatttagac 43318859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 3561152 - 3561110
Alignment:
Q  173 gcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||||| |||||||||||| |||||||||||||||||    
T  3561152 gcccctcaaaattcaaaatttcatcttttagacctatttttca 3561110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 26230338 - 26230412
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttag 203  Q
    |||||||| |||  |||| ||||| || ||||||| |||||| || ||||||||||| |||||||||||||||||    
T  26230338 tcaaggatgaagtatcccatagaagggacttcttatgggactctgtccctcaaaatctaaaatttcatcgtttag 26230412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 38885539 - 38885597
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| ||||||  |||||||||||| ||||||| ||||||||||||| ||||||||    
T  38885539 cttcttatgggactccgcccctcaaaattcaaaattccatcgtttagacccatttttca 38885597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 40650521 - 40650479
Alignment:
Q  173 gcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||||||||||||| ||||||||||||| ||||||||    
T  40650521 gcccctcaaaatccaaaattccatcgtttagacccatttttca 40650479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 49677789 - 49677847
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||  |||||||||||| ||||||| ||||||||||||  ||||||||    
T  49677789 cttcttacgggactccgcccctcaaaattcaaaattccatcgtttagactcatttttca 49677847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 52744656 - 52744618
Alignment:
Q  177 ctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  52744656 ctcaaaattcaaaatttcatcgtttagacctatttttca 52744618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 6223613 - 6223530
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||||||||| ||||||| |||||  | |||||||||| ||   |||||||||||||||||||| ||||||||||| | ||||||    
T  6223613 tcaaggatcatgactcccttagaagagacttcttacgg-acaccgcccctcaaaatccaaaattccatcgtttagatccattttt 6223530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 49786566 - 49786652
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || |||||||||||||  | ||||||| | ||||  |||||||||||||||||||| ||| ||| | ||| ||||||||    
T  49786566 tcaaggaccatgactcccgtagaagagacttcttatgagactccgcccctcaaaatccaaaattccattgttcaaacccatttttca 49786652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 44938114 - 44938074
Alignment:
Q  175 ccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||| ||||||||||| ||||||||| ||||||||    
T  44938114 ccctcaaaattcaaaatttcattgtttagacccatttttca 44938074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 45567715 - 45567679
Alignment:
Q  177 ctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||||||||||||||||| | |||||||||||    
T  45567715 ctcaaaatccaaaatttcatcgtctggacctattttt 45567679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 52743860 - 52743888
Alignment:
Q  176 cctcaaaatccaaaatttcatcgtttaga 204  Q
    |||||||||||||||||||||||||||||    
T  52743860 cctcaaaatccaaaatttcatcgtttaga 52743888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 38065433 - 38065350
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttt 212  Q
    |||||||||| |||||| ||||||  | ||||||||||||||  |||||||||||||||||||||||||||||||||| |||||    
T  38065433 tcaaggatcatgactcctgtagaagagacttcttacgggactccgcccctcaaaatccaaaatttcatcgtttagacccatttt 38065350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 15994956 - 15994890
Alignment:
Q  148 tagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttc 214  Q
    |||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||    
T  15994956 tagaatggacttcttacgggactccgcccctcaaaatccaaaatttcatcgtttagacccatttttc 15994890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 25217630 - 25217544
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||| ||||| || ||||||||||||||  ||||||||||||||||||||  |||||||||||| ||||||||    
T  25217630 tcaaggaccatgactcccatagaagggacttcttacgggactccgcccctcaaaatccaaaattctatcgtttagacccatttttca 25217544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 34517401 - 34517487
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||| ||||||| ||||| || |||||||||||| |  || ||||||||||||||||| ||||||||||||| ||||||||    
T  34517401 tcaaggatcatgactcccatagaagggacttcttacgggattccgcacctcaaaatccaaaattccatcgtttagaccaatttttca 34517487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 44465596 - 44465510
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||| ||||| || ||||||||||||||  |||||||||||||||||||| |||| |||||||| ||||||||    
T  44465596 tcaaggaccatgactcccctagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcttttagacccatttttca 44465510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 17133028 - 17133109
Alignment:
Q  134 gatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||| |||||  | ||| ||||||||||  | |||||||||||||||||||||||||||||||| ||||||||    
T  17133028 gatcaagactcccttagaagagactttttacgggactccgaccctcaaaatccaaaatttcatcgtttagacccatttttca 17133109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 30763948 - 30764025
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacc 206  Q
    |||| ||||||||||| | ||||| || ||||||||||||||  ||||||||||||||||||||||||||| ||||||    
T  30763948 tcaaagatcaagactctcatagaagggacttcttacgggactccgcccctcaaaatccaaaatttcatcgtctagacc 30764025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 42894675 - 42894759
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| || ||||||| ||||| |  ||||||||||||||  |||||||||||||||||||| ||||||||||||| ||||||    
T  42894675 tcaaggaccatgactcccttagaaggaacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccattttt 42894759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 39447474 - 39447541
Alignment:
Q  148 tagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||| || ||||||||||||||  |||||||||||||||||||| ||||||||||||| ||||||||    
T  39447474 tagaagggacttcttacgggactccgcccctcaaaatccaaaattacatcgtttagaccgatttttca 39447541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 33452270 - 33452212
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||||||| ||||||||    
T  33452270 cttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccatttttca 33452212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 17474626 - 17474570
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||||||| ||||||    
T  17474626 cttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccattttt 17474570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 35251231 - 35251313
Alignment:
Q  130 caaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttt 212  Q
    ||||||||||||||||| ||||| |  ||||||| |  |||  |||||| ||||||||||||||||||||||||||| |||||    
T  35251231 caaggatcaagactcccatagaaagtacttcttatgaaactccgccccttaaaatccaaaatttcatcgtttagacccatttt 35251313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 41854731 - 41854673
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| ||||||  |||||||||||||||||||| ||||||||||||| ||||||||    
T  41854731 cttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacccatttttca 41854673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 32187712 - 32187656
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||||||||   ||||||||||||||||||| ||||||||||||| ||||||    
T  32187712 cttcttacgggactccacccctcaaaatccaaaattccatcgtttagacccattttt 32187656  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 41203014 - 41202959
Alignment:
Q  160 cttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||| |||||  |||| ||||||||||||||||||||||||||||| ||||||||    
T  41203014 cttacaggactccgcccatcaaaatccaaaatttcatcgtttagacccatttttca 41202959  T

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Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 45293931 - 45294010
Alignment:
Q  133 ggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttt 212  Q
    |||||||||||||| ||||| || ||||||   |||||   ||||||||||||||||||||||||||||| ||| |||||    
T  45293931 ggatcaagactcccctagaagggacttcttgttggacttcacccctcaaaatccaaaatttcatcgtttaaaccaatttt 45294010  T

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Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 5507718 - 5507804
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||| ||||||| |||||    ||||||| || |||  |||||||||||||||||||| ||||||||||||  ||||||||    
T  5507718 tcaaggatcatgactcccatagaagaaacttcttatggaactccgcccctcaaaatccaaaattccatcgtttagactcatttttca 5507804  T

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Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 33440364 - 33440282
Alignment:
Q  131 aaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||||||||||||||  || || || ||||||||||||||  ||| |||||||| ||||||| ||||||||||| | ||||||    
T  33440364 aaggatcaagactcctataaaagggacttcttacgggactccgcctctcaaaattcaaaattccatcgtttagatccattttt 33440282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 42604850 - 42604796
Alignment:
Q  161 ttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||  |||||| ||||||||||||||||||||||||||| | ||||||    
T  42604850 ttacgggacttcgccccttaaaatccaaaatttcatcgtttagacccacttttca 42604796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 11457250 - 11457335
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttc 214  Q
    ||||||||||| | |||| ||||| || ||||||||| ||||  | ||||||||||  |||||| ||||||||||||| |||||||    
T  11457250 tcaaggatcaaaattcccatagaagggacttcttacgagactccgtccctcaaaatttaaaattccatcgtttagaccaatttttc 11457335  T

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Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 41510257 - 41510208
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacc 206  Q
    ||||||| ||||||   |||||||||||||||||||||||||||||||||    
T  41510257 cttcttatgggactccacccctcaaaatccaaaatttcatcgtttagacc 41510208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 16750256 - 16750216
Alignment:
Q  173 gcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  16750256 gcccctcaaaatccaaaattccatcgtttagacccattttt 16750216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 18204948 - 18204864
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| ||||||| ||||| || ||  ||||||||| ||| |||||||||||||  ||||||||||  ||||||||| |||||    
T  18204948 tcaaggaacaagacttccgtaaaagggatttcttacggaactctgcccctcaaaatttaaaatttcattatttagaccttttttt 18204864  T

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Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 24477099 - 24477043
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||||||||   ||||||||||||||||| ||||||||||||| | ||||||    
T  24477099 cttcttacgggacttcacccctcaaaatccaaaacttcatcgtttagatccattttt 24477043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 27670824 - 27670880
Alignment:
Q  159 tcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||| ||||||  |||||||||||| ||||||| ||||||||||||| ||||||||    
T  27670824 tcttatgggactccgcccctcaaaattcaaaattccatcgtttagacccatttttca 27670880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 12885350 - 12885272
Alignment:
Q  137 caagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||||    ||||||||| ||||  ||||||||||| ||||||||||| | | |||||| ||||||||    
T  12885350 caagactcccgtagaagaaacttcttacgcgactccgcccctcaaaacccaaaatttcaacatatagaccgatttttca 12885272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 38066835 - 38066798
Alignment:
Q  37 tggattttataatccgaaaacatcaaaaaatagtgtgt 74  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  38066835 tggattttataatccgaaaacttcaaaaaatagggtgt 38066798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 38308688 - 38308611
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacc 206  Q
    |||||||||| ||||||| ||||| ||  || |||  |||||  |||||||||||||||||||| ||| |||||||||    
T  38308688 tcaaggatcatgactcccttagaagggaatttttattggactccgcccctcaaaatccaaaattccattgtttagacc 38308611  T

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Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 41204267 - 41204304
Alignment:
Q  178 tcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  41204267 tcaaaatccaaaatttcatcgtttagactcatttttca 41204304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 9847364 - 9847297
Alignment:
Q  134 gatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgttta 202  Q
    |||||||||| || |||||  | |||||||||||||| ||||| ||||||||||||||| |||| ||||    
T  9847364 gatcaagacttccttagaagagacttcttacgggactctgccc-tcaaaatccaaaattccatcattta 9847297  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 3304612 - 3304528
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| || ||||||  ||||| || ||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  3304612 tcaaggaccatgactcctctagaagggacttcttacgggactccgcccctcaaaatccaaaatttcattgtttagacctattttt 3304528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 9152089 - 9152173
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| || ||||||| ||||| || ||||||||||||||  |||||||||||||||||||| ||||||||||||| ||||||    
T  9152089 tcaaggaccatgactcccctagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccattttt 9152173  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 19818678 - 19818763
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||||||||| || ||||||||||||||   ||||||||| ||||||||| ||||||||||||||||||||||    
T  19818678 tcaaggaccatgactcccgtagaagggacttcttacgggactccacccctcaaa-tccaaaattccatcgtttagacctatttttca 19818763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 42925501 - 42925415
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||| ||||| || ||||||| ||||||  |||||||||||||||||||| ||||||||||||| ||||||||    
T  42925501 tcaaggaccatgactcccttagaagggacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacccatttttca 42925415  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 43186083 - 43186157
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttag 203  Q
    |||||||||||||||||| ||||| || ||||||||||||||  |||||| ||||||||||||| ||||||||||    
T  43186083 tcaaggatcaagactcccttagaagggacttcttacgggactccgcccctaaaaatccaaaattccatcgtttag 43186157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 7115130 - 7115046
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||||||||||||||||| ||||| || ||||||||||||||    |||||||||||||||||| ||| ||||||||| ||||||    
T  7115130 tcaaggatcaagactcccttagaagggacttcttacgggactccttccctcaaaatccaaaattccattgtttagacccattttt 7115046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 16278316 - 16278388
Alignment:
Q  134 gatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacc 206  Q
    ||||||||||||| ||||| || ||||||||||||||  || | |||||||||||||||||||||||||||||    
T  16278316 gatcaagactcccttagaagggacttcttacgggactccgcacatcaaaatccaaaatttcatcgtttagacc 16278388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 8155197 - 8155280
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttt 212  Q
    |||||||||| |||||||||| || |  ||||||||||||||  |||||||||||||||||||| ||| ||||||||| |||||    
T  8155197 tcaaggatcatgactcccgtacaaggaacttcttacgggactccgcccctcaaaatccaaaattccattgtttagacccatttt 8155280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 33573881 - 33573823
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||  |||||||||||||||||||||||| ||||||||| ||||||||    
T  33573881 cttcttacgggactccgcccctcaaaatccaaaatttcattgtttagacccatttttca 33573823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 47202785 - 47202871
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||| ||||| || ||||||| ||||||  |||||||||||||||||||| ||| ||||||||| ||||||||    
T  47202785 tcaaggaccatgactcccatagaagggacttcttaagggactccgcccctcaaaatccaaaattccattgtttagacccatttttca 47202871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 26554995 - 26554938
Alignment:
Q  158 ttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||| |||||| ||||||||||||||||||||| ||||||||||||| ||||||||    
T  26554995 ttcttatgggactctgcccctcaaaatccaaaattccatcgtttagacccatttttca 26554938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 6466997 - 6466914
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||||||||||||||||  ||||| |  ||||||| ||||||  ||||||||||||| |||||||||||||||||||| ||||||    
T  6466997 tcaaggatcaagactcctatagaa-gtacttcttatgggactccgcccctcaaaatctaaaatttcatcgtttagacccattttt 6466914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 37518124 - 37518040
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| || ||||||| |||||  | |||||||| |||||  |||||||||||||||||||| ||||||||||||| ||||||    
T  37518124 tcaaggaccatgactcccatagaagagacttcttacaggactccgcccctcaaaatccaaaattccatcgtttagacccattttt 37518040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 47239560 - 47239493
Alignment:
Q  148 tagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||| || ||||||||||||||  ||| ||||||||||||||||||||||||||| ||| |||||||    
T  47239560 tagaagggacttcttacgggacttcgcctctcaaaatccaaaatttcatcgtttagtcctgtttttca 47239493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 48705846 - 48705775
Alignment:
Q  143 tcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttc 214  Q
    |||||||||| || |||||||  |||||  |||||||||| ||||||||||||||||||||||| |||||||    
T  48705846 tcccgtagaagggacttcttataggactccgcccctcaaattccaaaatttcatcgtttagacccatttttc 48705775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 19225459 - 19225373
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||| ||||| |  |||||||| |||||  |||||||||||||||||||| ||||||||||| | ||||||||    
T  19225459 tcaaggaacatgactcccatagaaggaacttcttacaggactccgcccctcaaaatccaaaattccatcgtttagatccatttttca 19225373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 24042030 - 24041972
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||  |||||||||||||||||| | ||||||||||||| ||||||||    
T  24042030 cttcttacgggactccgcccctcaaaatccaaaactccatcgtttagacccatttttca 24041972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 31985378 - 31985292
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||| ||||| | ||||| ||  ||||||| ||||| ||||||||||| |||||||||  |||||||||||| ||||||||    
T  31985378 tcaaggatcatgactctcatagaagggatttcttacaggactctgcccctcaaactccaaaattcaatcgtttagacccatttttca 31985292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 36468372 - 36468314
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||  ||||||||| || ||||||||||||||||||||| ||||||||    
T  36468372 cttcttacgggactccgcccctcaagattcaaaatttcatcgtttagacccatttttca 36468314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 36629501 - 36629577
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagac 205  Q
    ||||||| || ||||||||||||| || ||||||||||||||    || ||||||||||||||| ||||||||||||    
T  36629501 tcaaggaccatgactcccgtagaagggacttcttacgggactccatccttcaaaatccaaaattccatcgtttagac 36629577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 43737380 - 43737466
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||| ||||| |  ||||||  ||||||  ||||||||||||| |||||| ||||||||||||| ||||||||    
T  43737380 tcaaggaccatgactcccttagaaggaacttcttgtgggactccgcccctcaaaatctaaaattccatcgtttagacccatttttca 43737466  T

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Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 42864963 - 42864878
Alignment:
Q  129 tcaaggatcaagactcccgtagaatg-gtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| || ||||||| ||||| | | ||||||| ||||||  ||||||||||||||||||||  |||||||||||| ||||||    
T  42864963 tcaaggaccatgactcccttagaaagagacttcttatgggactccgcccctcaaaatccaaaattcaatcgtttagacccattttt 42864878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 1519012 - 1519096
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||||||| |||||||||| || |||| || | ||||  || |||||||||| |||||| ||||||||||| | ||||||    
T  1519012 tcaaggatcaagattcccgtagaagggacttcctatgtgactccgctcctcaaaatctaaaattccatcgtttagatccattttt 1519096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 8214450 - 8214378
Alignment:
Q  134 gatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacc 206  Q
    ||||||| ||||| ||||| || ||||||||| ||||  |||||||| ||||||||||| |||| ||||||||    
T  8214450 gatcaaggctcccttagaagggacttcttacgagacttcgcccctcacaatccaaaattccatcttttagacc 8214378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 24690194 - 24690111
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||| ||||||| |||   || |||||||| ||||| | |||||||||||||||||||  |||||||||| ||| ||||||    
T  24690194 tcaaggatcatgactcccttag---ggacttcttacaggactttacccctcaaaatccaaaattcaatcgtttagatctacttttca 24690111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 31643338 - 31643424
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||| ||||| |  ||||||| ||||||   ||||||||||||||||||| |||  |||||||| ||||||||    
T  31643338 tcaaggaccatgactcccttagaaggaacttcttatgggactccacccctcaaaatccaaaattccattatttagacccatttttca 31643424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 28230308 - 28230267
Alignment:
Q  174 cccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||||| |||||| ||||||||||||| ||||||||    
T  28230308 cccctcaaaatctaaaattccatcgtttagacccatttttca 28230267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 37402834 - 37402757
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacc 206  Q
    |||||||||||  || || |||||||| ||||||| |||| |  || |||||||||||||||||| || |||||||||    
T  37402834 tcaaggatcaactcttccttagaatggacttcttatgggattccgcacctcaaaatccaaaattttatagtttagacc 37402757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 16983907 - 16983871
Alignment:
Q  38 ggattttataatccgaaaacatcaaaaaatagtgtgt 74  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  16983907 ggattttataatccaaaaacctcaaaaaatagtgtgt 16983871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 30861384 - 30861464
Alignment:
Q  132 aggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttt 212  Q
    |||||||||| |||  ||||| || |||||||| ||| |   |||||| |||| ||||||||||||||||||||| |||||    
T  30861384 aggatcaagaatcctttagaagggacttcttacaggattcctcccctcgaaattcaaaatttcatcgtttagacccatttt 30861464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 32701111 - 32701035
Alignment:
Q  139 agactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||| ||||| || ||||||||||| || | |||||||||||  || ||| |||| |||||||| ||||||||    
T  32701111 agactcccttagaagggacttcttacggggctcttcccctcaaaatttaacattccatcttttagacccatttttca 32701035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 6156991 - 6157075
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| || ||||||||||| | || ||||||||||||||  |||||||||||||||||||| ||||||||||||| ||||||    
T  6156991 tcaaggaccatgactcccgtagtagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccattttt 6157075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 32841832 - 32841748
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||||||||| ||||||| ||||| || ||||||| ||||||  |||||||||||||||||||| ||||||||||||| ||||||    
T  32841832 tcaaggatcatgactcccctagaagggacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacccattttt 32841748  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 14112125 - 14112211
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || || |||| ||||| || ||||||||||||||  |||||||||||||||||||| ||||||||||||| ||||||||    
T  14112125 tcaaggaccatgaatcccatagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccatttttca 14112211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 26898664 - 26898578
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || |||||| |||||| || |||||||| |||||  |||||||||||||||||||||||||||||||||  ||||||||    
T  26898664 tcaaggaccatgactcctgtagaagggacttcttacaggactccgcccctcaaaatccaaaatttcatcgtttagactcatttttca 26898578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 31928986 - 31928900
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||| ||||| || |||||| |||||||  |||| ||||||||||||||||||||||||||||| ||||||||    
T  31928986 tcaaggaccatgactcccttagaagggacttcttgcgggactccgcccttcaaaatccaaaatttcatcgtttagacccatttttca 31928900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 26093719 - 26093802
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttt 212  Q
    ||||||||||| |||||||||||  || ||||||||||||||   ||||||||||||||||||| |||| |||||||| |||||    
T  26093719 tcaaggatcaaaactcccgtagaggggacttcttacgggactcctcccctcaaaatccaaaattccatcatttagacccatttt 26093802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 7884454 - 7884540
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || |||||||||||||  | |||||||||| |||  ||||||||||||| |||||||||| ||||||||| ||||||||    
T  7884454 tcaaggaccatgactcccgtagaagagacttcttacggaactccgcccctcaaaatctaaaatttcattgtttagacccatttttca 7884540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 12464951 - 12464893
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||||||| ||||||||||||||||||||| |||  |||||||||||||||||    
T  12464951 cttcttacgggactctgcccctcaaaatccaaaattccattatttagacctatttttca 12464893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 37183642 - 37183560
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattt 211  Q
    ||||||| || ||||||||||||| || | ||||||||||||  |||||||||||||||||||| |||| |||||||| ||||    
T  37183642 tcaaggaccatgactcccgtagaagggacatcttacgggactccgcccctcaaaatccaaaattccatcatttagacccattt 37183560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 39525036 - 39525122
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||| ||||| |  ||||||  |||||| ||||||||||||||||||||| ||||||||||||| ||||||||    
T  39525036 tcaaggaccatgactcccttagaaggaacttcttgtgggactctgcccctcaaaatccaaaattccatcgtttagaccaatttttca 39525122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 16429244 - 16429316
Alignment:
Q  134 gatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacc 206  Q
    |||||||||| || ||||| || ||||||||||||||  |||||||||||| |||||||| ||||||||||||    
T  16429244 gatcaagactaccttagaagggacttcttacgggactccgcccctcaaaattcaaaattttatcgtttagacc 16429316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 31221181 - 31221115
Alignment:
Q  148 tagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||| || ||||||||| ||||  |||||||||||||||||||||||||||||||||| ||||||||    
T  31221181 tagaagggacttcttacgagactccgcccctcaaaatccaaaatttcatcgtttagacc-atttttca 31221115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 11186048 - 11185962
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||| ||||||||| ||| || |||||||||  |||  |||||||||||| |||||||  |||||||||||| ||||||||    
T  11186048 tcaaggatcaggactcccgttgaagggacttcttacgatactccgcccctcaaaattcaaaattcaatcgtttagacccatttttca 11185962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 5456316 - 5456389
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgttta 202  Q
    ||||| |||||||||| | ||||| ||  |||||||||||||  ||| ||||||||||||||||||||||||||    
T  5456316 tcaagaatcaagactcacttagaagggatttcttacgggactccgcctctcaaaatccaaaatttcatcgttta 5456389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 21070632 - 21070709
Alignment:
Q  136 tcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||||| ||||| || |||||||  ||||  ||||||||||||||||||||| ||| ||||||||| ||||||    
T  21070632 tcaagactcccctagaagggacttcttattggacactgcccctcaaaatccaaaattccattgtttagacccattttt 21070709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 15958037 - 15958093
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| ||||||  ||| |||||||||||||||||||||||||||||| ||||||    
T  15958037 cttcttatgggacttcgcctctcaaaatccaaaatttcatcgtttagaccaattttt 15958093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 28083208 - 28083160
Alignment:
Q  158 ttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacc 206  Q
    |||||| |||||||||||||||||||||||||||| ||||||| |||||    
T  28083208 ttcttatgggactatgcccctcaaaatccaaaattccatcgttcagacc 28083160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 33487871 - 33487955
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||||||||| ||||||| ||||| || ||||||  |||||   |||||| ||||||||||||| ||||||||||||| ||||||    
T  33487871 tcaaggatcatgactcccttagaagggacttcttttgggaccccgcccctaaaaatccaaaattccatcgtttagacccattttt 33487955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 40619818 - 40619762
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||||||||  |||||||||||||||||||| |||| |||||||| ||||||    
T  40619818 cttcttacgggactccgcccctcaaaatccaaaattccatcatttagacccattttt 40619762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 26190172 - 26190097
Alignment:
Q  140 gactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| ||||| |  ||||||| ||||||  |||||||||||||||||||| ||| ||||||||| ||||||||    
T  26190172 gactcccctagaaggaacttcttaagggactccgcccctcaaaatccaaaattccattgtttagacccatttttca 26190097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 38692644 - 38692557
Alignment:
Q  129 tcaaggatcaagactcccgtag-aatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||| ||| || || ||||||||||||||  ||||||||||||||||||||  |||||||||||  ||||||||    
T  38692644 tcaaggaccatgactcccttaggaagggacttcttacgggactccgcccctcaaaatccaaaattctatcgtttagacacatttttca 38692557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 20891872 - 20891958
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||| ||||||| || || || |||||||||||| |  | || ||||||||||||||| ||||||||||||  ||||||||    
T  20891872 tcaaggatcatgactcccctacaagggacttcttacgggattccgtccttcaaaatccaaaattccatcgtttagacacatttttca 20891958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 27158388 - 27158430
Alignment:
Q  173 gcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||||||||||||| ||||||||||||| ||||||||    
T  27158388 gcccctcaaaatccaaaattccatcgtttagacccatttttca 27158430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 27212974 - 27213040
Alignment:
Q  140 gactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacc 206  Q
    ||||||| ||||| || ||||||||||||||  ||||||||||||| |||||| ||| |||||||||    
T  27212974 gactcccctagaagggacttcttacgggactccgcccctcaaaatctaaaattccattgtttagacc 27213040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 33331447 - 33331485
Alignment:
Q  175 ccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  33331447 ccctcaaaatccaaaatttcatcgtttagaccttttttt 33331485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 41253566 - 41253652
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||||||||||| |||||  | ||||||  | ||||  | || |||||||| |||||||||||||||||||| ||||||||    
T  41253566 tcaaggatcaagactcccttagaagagacttctttagagactccgaccttcaaaatctaaaatttcatcgtttagacccatttttca 41253652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 19027336 - 19027393
Alignment:
Q  156 tcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||||||||| ||||   |||||||||||||||||||  |||||||||||||||||||    
T  19027336 tcttcttacgagacttcacccctcaaaatccaaaattatatcgtttagacctattttt 19027393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 38640898 - 38640978
Alignment:
Q  134 gatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||| || ||  | ||||||||||||||| |||| ||||||||||||||| |||| ||||||||  |||||||    
T  38640898 gatcaagactcccttataaatgacttcttacgggactacgccc-tcaaaatccaaaattccatcatttagacccttttttca 38640978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 5247315 - 5247283
Alignment:
Q  173 gcccctcaaaatccaaaatttcatcgtttagac 205  Q
    |||||||||||||||||||||||||||||||||    
T  5247315 gcccctcaaaatccaaaatttcatcgtttagac 5247283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 6800757 - 6800725
Alignment:
Q  173 gcccctcaaaatccaaaatttcatcgtttagac 205  Q
    |||||||||||||||||||||||||||||||||    
T  6800757 gcccctcaaaatccaaaatttcatcgtttagac 6800725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 31561706 - 31561774
Alignment:
Q  131 aaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgt 199  Q
    ||||| ||||||||||||||||    ||||||||||||||   | ||||||||||||||||||||||||    
T  31561706 aaggaccaagactcccgtagaagaaacttcttacgggacttcactcctcaaaatccaaaatttcatcgt 31561774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 8739139 - 8739080
Alignment:
Q  133 ggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatt 192  Q
    |||||||||||||| ||||| |  ||| ||||||||||  ||||||||||||||||||||    
T  8739139 ggatcaagactcccttagaaggaacttattacgggactccgcccctcaaaatccaaaatt 8739080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 15799530 - 15799569
Alignment:
Q  174 cccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||||||||||||| ||||||||||||| ||||||    
T  15799530 cccctcaaaatccaaaattccatcgtttagaccaattttt 15799569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 38641106 - 38641184
Alignment:
Q  134 gatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||||||||| || |||||  | |||||||||||||  ||||| |||||||||||||||| ||| ||||||||| |||||    
T  38641106 gatcaagacttccttagaagagacttcttacgggaccctgccc-tcaaaatccaaaattttatcatttagaccttttttt 38641184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 43388011 - 43387937
Alignment:
Q  138 aagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||| ||||| || ||||||||||||||  | || ||||||||||||||| |||| ||||||||| |||||    
T  43388011 aagactcccttagaaaggacttcttacgggactccgtcc-tcaaaatccaaaattccatcatttagaccttttttt 43387937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 38871959 - 38872005
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttag 203  Q
    |||||||||||||| ||||||| |||||||||||||  |||||||||    
T  38871959 cttcttacgggactttgccccttaaaatccaaaattctatcgtttag 38872005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 12847717 - 12847749
Alignment:
Q  183 atccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||||||||||||||||| ||||||||    
T  12847717 atccaaaatttcatcgtttagacccatttttca 12847749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 41639314 - 41639286
Alignment:
Q  174 cccctcaaaatccaaaatttcatcgttta 202  Q
    |||||||||||||||||||||||||||||    
T  41639314 cccctcaaaatccaaaatttcatcgttta 41639286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 42289752 - 42289792
Alignment:
Q  165 gggactatgcccctcaaaatccaaaatttcatcgtttagac 205  Q
    |||||| |||||||||||||||||||||  |||||||||||    
T  42289752 gggactctgcccctcaaaatccaaaattctatcgtttagac 42289792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 42497795 - 42497712
Alignment:
Q  130 caaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||||||||||| | ||| || |||||||| |||||  ||||||||||||| |||||||||| ||||||||||||||||    
T  42497795 caaggatcaagactcccatggaaggggcttcttacaggactccgcccctcaaaatctaaaatttcattgtttagacctattttt 42497712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 29822886 - 29822972
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||||||||| || |||| ||||||||| ||||||||||||| ||||||| ||||||||||||  ||||||||    
T  29822886 tcaaggaccatgactcccgtagaagggacttcctacgggactctgcccctcaaaattcaaaattccatcgtttagactcatttttca 29822972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 46440133 - 46440047
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || |||||||  |||| || ||||||||||||||  |||||||||||||||||||||||||||||||||  ||||||||    
T  46440133 tcaaggaccatgactcccaaagaagggacttcttacgggactccgcccctcaaaatccaaaatttcatcgtttagacacatttttca 46440047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 53893875 - 53893801
Alignment:
Q  141 actcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||||| || ||||||| ||| ||  |||||||||||||||||||||||||||||||||| ||||||||    
T  53893875 actcccgtagaagggacttcttatgggtctccgcccctcaaaatccaaaatttcatcgtttagacccatttttca 53893801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 49001415 - 49001330
Alignment:
Q  130 caaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||| ||||||| ||||| || ||||||||||||||  || ||||||||||||||||| ||||||||||| ||||| ||||    
T  49001415 caaggatcatgactcccttagaagggacttcttacgggactccgctcctcaaaatccaaaattacatcgtttagatctattcttca 49001330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 7931962 - 7932038
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagac 205  Q
    ||||||| || ||||||| ||||| || ||||||||||||||  |||||||||||||||||||| ||||||||||||    
T  7931962 tcaaggaccatgactcccctagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagac 7932038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 25752304 - 25752220
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| || ||||||| |||||  | ||||||||||||||  |||||||||||||||||||| ||||||||||||| ||||||    
T  25752304 tcaaggaccatgactcccttagaagagacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccattttt 25752220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 14474048 - 14473990
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||| ||||||||    
T  14474048 cttcttacgggactccgcccctcaagatccaaaatttcatcgtttagacccatttttca 14473990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 38417097 - 38417182
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||| ||||||| || |||||||| |||||  |||| ||||||||||||||||||||||||||||| ||||||||    
T  38417097 tcaaggaccatgactcacgtagaagggacttcttacaggactccgcccttcaaaatccaaaatttcatcgtttagacc-atttttca 38417182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 54631353 - 54631267
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||| ||||| || ||||||||||||||  || ||||||||| ||||||| ||||||||||||| ||||||||    
T  54631353 tcaaggaccatgactcccatagaaaggacttcttacgggactccgcacctcaaaatacaaaattccatcgtttagaccaatttttca 54631267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 38536496 - 38536563
Alignment:
Q  148 tagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||| || ||||||| ||||||  |||||||||||||||||||| ||||||||||||| ||||||||    
T  38536496 tagaaaggacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacccatttttca 38536563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 8106700 - 8106786
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||| ||||||||||||| |  ||||||||||||||  ||| ||||||||| ||||||  |||||||||| | ||||||||    
T  8106700 tcaaggatcatgactcccgtagaaggaacttcttacgggactccgcctctcaaaatcaaaaattaaatcgtttagatccatttttca 8106786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 18051050 - 18050964
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||||||||| |  ||| |||||||| |  |||||||||||||||||||| |||||||||||||  |||||||    
T  18051050 tcaaggaccatgactcccgtagaaggaactttttacgggattccgcccctcaaaatccaaaattccatcgtttagacccttttttca 18050964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 23524093 - 23524179
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || |||||||| |||| || ||| ||| ||||||  ||||||||||||||||||||||||  |||||||| ||||||||    
T  23524093 tcaaggaccatgactcccgaagaagggacttattatgggacttcgcccctcaaaatccaaaatttcattatttagacccatttttca 23524179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 48318897 - 48318839
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||| |||||  |||||||||||||||||||| ||||||||||||| ||||||||    
T  48318897 cttcttacaggactccgcccctcaaaatccaaaattccatcgtttagacccatttttca 48318839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 19835837 - 19835910
Alignment:
Q  140 gactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| || || || ||||||||||||||  |||||||||||||||||||| ||| ||||||||| ||||||    
T  19835837 gactcccctaaaagggacttcttacgggactccgcccctcaaaatccaaaattccattgtttagacccattttt 19835910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 4936579 - 4936499
Alignment:
Q  133 ggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||||||||||||| |||||    ||||||| ||||||  | ||||||||||||||||||||||| |||||||| ||||||    
T  4936579 ggatcaagactcccttagaagatacttcttatgggactccgtccctcaaaatccaaaatttcatcttttagacccattttt 4936499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 25538839 - 25538763
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagac 205  Q
    ||||||| || ||||||| |||||  | ||||||||||||||  |||||||||||||||||||  ||||||||||||    
T  25538839 tcaaggaacatgactcccttagaagagacttcttacgggactccgcccctcaaaatccaaaataccatcgtttagac 25538763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 2505892 - 2505805
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttaga-cctatttttca 215  Q
    ||||||| || |||||||  |||| || |||||||||||| | |||||||||||||||||||||  |||||||| | |||||||||||    
T  2505892 tcaaggaccatgactccccaagaagggacttcttacgggattctgcccctcaaaatccaaaattctatcgtttacaccctatttttca 2505805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 32601155 - 32601230
Alignment:
Q  140 gactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||  ||| ||| ||||||  ||||||  ||| |||||||||||||||| ||||||||||||||||||||||    
T  32601155 gactccccaagagtggacttcttgggggactccgccgctcaaaatccaaaattccatcgtttagacctatttttca 32601230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 47784344 - 47784383
Alignment:
Q  174 cccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  47784344 cccctcaaaatccaaaatttcatcgtttagaccaattttt 47784383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 6003506 - 6003448
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||  ||||||||||||||||||||  || ||||||||| ||||||||    
T  6003506 cttcttacgggactccgcccctcaaaatccaaaattctattgtttagaccaatttttca 6003448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 25491256 - 25491170
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || ||||||| ||||| || ||||| | |||| |  | |||||||||||||||||| ||||||||||||| ||||||||    
T  25491256 tcaaggaccatgactcccttagaagggacttctcaagggattccgtccctcaaaatccaaaattccatcgtttagaccaatttttca 25491170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 34973198 - 34973256
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||| |||||||  |||||||||||||||||||| ||| ||||||||| ||||||||    
T  34973198 cttctttcgggactccgcccctcaaaatccaaaattccattgtttagacccatttttca 34973256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 40703998 - 40704056
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||  ||||||||||||| |||||| ||||||||| ||| ||||||||    
T  40703998 cttcttacgggactccgcccctcaaaatctaaaattccatcgtttaaacccatttttca 40704056  T

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Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 49397361 - 49397403
Alignment:
Q  173 gcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  49397361 gcccctcaaaatccaaaatttcattgtttagacccatttttca 49397403  T

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Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 27741971 - 27741890
Alignment:
Q  132 aggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| | ||||||||||| |  ||||||| ||||||  |||||||||||||||||||| ||| ||||||| || |||||    
T  27741971 aggatcatgcctcccgtagaaggaacttcttatgggactccgcccctcaaaatccaaaattccattgtttagatcttttttt 27741890  T

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Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 31582247 - 31582207
Alignment:
Q  173 gcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  31582247 gcccctcaaaatccaaaattccatcgtttagacccattttt 31582207  T

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Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 48095723 - 48095639
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||||||||||  |||||| || |||||| |||||||  |||  ||||||||| ||||| ||||| ||||||| ||||||    
T  48095723 tcaaggatcaagactcatgtagaagggacttcttgcgggactccgcctttcaaaatccgaaattccatcgattagacccattttt 48095639  T

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Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 52089572 - 52089628
Alignment:
Q  141 actcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatc 197  Q
    |||||| ||||| || ||||||||||||||  |||||||||||||||||||| ||||    
T  52089572 actcccatagaagggacttcttacgggactccgcccctcaaaatccaaaattccatc 52089628  T

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Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 5803290 - 5803203
Alignment:
Q  129 tcaaggatcaagactcccg-tagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||||||  ||||| |  ||||||| ||||||   |||| |||||| ||||||| ||||||||||||| ||||||||    
T  5803290 tcaaggatcaagactccccctagaaggaacttcttatgggactccaccccacaaaattcaaaattccatcgtttagacccatttttca 5803203  T

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Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 6228663 - 6228592
Alignment:
Q  140 gactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattt 211  Q
    ||||||||||||| |  |||||||| |||||   ||||||||||||||||||| ||| ||||||||| ||||    
T  6228663 gactcccgtagaaggaacttcttacaggactcctcccctcaaaatccaaaattccattgtttagacccattt 6228592  T

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Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 20083323 - 20083362
Alignment:
Q  176 cctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  20083323 cctcaaaatccaaaattccatcgtttagacccatttttca 20083362  T

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Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 3703116 - 3703030
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    |||| ||||| ||||||| |||||  | ||||||| ||||||  | || ||||||||||||||| |||||||| |||| ||||||||    
T  3703116 tcaaagatcatgactcccttagaaatgacttcttatgggactccgtccttcaaaatccaaaattccatcgtttggacccatttttca 3703030  T

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Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 372227 - 372300
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgttta 202  Q
    |||| |||||||||| || || || || ||||||||||||||   ||||||||||| |||||| ||||||||||    
T  372227 tcaaagatcaagacttccttataagggacttcttacgggactcctcccctcaaaattcaaaatatcatcgttta 372300  T

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Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 47456911 - 47456984
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgttta 202  Q
    |||||||||||||||||  |||||  | ||||||| || |||  | |||||||||||||||||| |||||||||    
T  47456911 tcaaggatcaagactcctctagaagagacttcttatggaactccgtccctcaaaatccaaaattccatcgttta 47456984  T

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Target: scaffold0010 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 140784 - 140868
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||| || ||||||| || || || ||||||||||||||  ||||||||||||||||| ||||||||||||||| |||||||    
T  140784 tcaaggaccatgactcccataaaagggacttcttacgggacttcgcccctcaaaatccaaagtttcatcgtttagacatattttt 140868  T

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Target: scaffold0182 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 23299 - 23357
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||||||| ||||||||    
T  23299 cttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacccatttttca 23357  T

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Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 174222 - 174136
Alignment:
Q  129 tcaaggatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacctatttttca 215  Q
    ||||||| || |||||| |||||| || ||||||||| ||||  |||||||||||| ||||||| ||||||||||||  ||||||||    
T  174222 tcaaggaccatgactcctgtagaagggacttcttacgagactccgcccctcaaaattcaaaattccatcgtttagacacatttttca 174136  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 141826 - 141778
Alignment:
Q  158 ttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacc 206  Q
    |||||| |||||| ||||||||||||||||||||| |||||||||||||    
T  141826 ttcttatgggactctgcccctcaaaatccaaaattccatcgtttagacc 141778  T

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Target: scaffold0564 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 4697 - 4745
Alignment:
Q  157 cttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagac 205  Q
    ||||||||||||||   ||||||||||||||||||| ||||||||||||    
T  4697 cttcttacgggactccacccctcaaaatccaaaattacatcgtttagac 4745  T

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Target: scaffold0508 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 3209 - 3170
Alignment:
Q  174 cccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    ||||||||||||||||||| ||||||||||||| ||||||    
T  3209 cccctcaaaatccaaaattccatcgtttagacccattttt 3170  T

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Target: scaffold0016 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 205754 - 205684
Alignment:
Q  134 gatcaagactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagac 205  Q
    ||||||||||||| |||||  | ||||||||||||||    ||||||||||||||||||||||| |||||||    
T  205754 gatcaagactcccttagaagagacttcttacgggact-ccaccctcaaaatccaaaatttcatcatttagac 205684  T

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Target: scaffold0137 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 9347 - 9282
Alignment:
Q  140 gactcccgtagaatggtcttcttacgggactatgcccctcaaaatccaaaatttcatcgtttagacc 206  Q
    ||||||| ||||| || ||||||||||||||  |||||||||||| ||||||  |||||||||||||    
T  9347 gactcccttagaa-ggacttcttacgggactccgcccctcaaaattcaaaataccatcgtttagacc 9282  T

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Target: scaffold0770 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 4127 - 4167
Alignment:
Q  173 gcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||||||||||||||||||| ||| ||||| ||||||||||    
T  4127 gcccctcaaaatccaaaattccattgtttaaacctattttt 4167  T

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Target: scaffold0029 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 102431 - 102471
Alignment:
Q  173 gcccctcaaaatccaaaatttcatcgtttagacctattttt 213  Q
    |||||||||||||||||||| ||| ||||| ||||||||||    
T  102431 gcccctcaaaatccaaaattccattgtttaaacctattttt 102471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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