View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5998_low_6 (Length: 270)

Name: NF5998_low_6
Description: NF5998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5998_low_6
NF5998_low_6
[»] scaffold0218 (2 HSPs)
scaffold0218 (150-264)||(14378-14493)
scaffold0218 (9-86)||(14237-14314)
[»] scaffold0091 (3 HSPs)
scaffold0091 (150-264)||(29058-29173)
scaffold0091 (9-86)||(28917-28994)
scaffold0091 (9-71)||(24720-24782)
[»] chr3 (9 HSPs)
chr3 (152-264)||(16642300-16642413)
chr3 (151-264)||(4712799-4712913)
chr3 (150-264)||(14062777-14062892)
chr3 (150-264)||(14055036-14055151)
chr3 (153-253)||(13926858-13926960)
chr3 (9-73)||(16642133-16642197)
chr3 (9-73)||(4712995-4713059)
chr3 (9-73)||(14062981-14063045)
chr3 (9-72)||(14055221-14055284)
[»] chr6 (4 HSPs)
chr6 (150-264)||(14989374-14989489)
chr6 (151-264)||(14980262-14980376)
chr6 (9-73)||(14980458-14980522)
chr6 (150-186)||(10906902-10906938)
[»] chr1 (5 HSPs)
chr1 (150-264)||(51658661-51658776)
chr1 (150-256)||(13882243-13882350)
chr1 (9-73)||(13882462-13882526)
chr1 (12-70)||(51658854-51658912)
chr1 (164-257)||(1567069-1567166)
[»] chr7 (8 HSPs)
chr7 (150-264)||(48376788-48376903)
chr7 (150-264)||(16060513-16060628)
chr7 (9-86)||(16060374-16060449)
chr7 (150-253)||(4531759-4531864)
chr7 (9-72)||(9080206-9080269)
chr7 (9-61)||(16069015-16069067)
chr7 (9-61)||(48376637-48376689)
chr7 (150-186)||(9080339-9080375)
[»] chr8 (7 HSPs)
chr8 (150-264)||(23658527-23658650)
chr8 (206-264)||(23657827-23657885)
chr8 (9-60)||(23657648-23657699)
chr8 (150-204)||(23657752-23657807)
chr8 (9-60)||(23658423-23658474)
chr8 (9-61)||(17862251-17862303)
chr8 (218-253)||(29293929-29293964)
[»] scaffold1269 (1 HSPs)
scaffold1269 (172-264)||(1-94)
[»] scaffold0003 (2 HSPs)
scaffold0003 (150-223)||(130796-130870)
scaffold0003 (9-73)||(130633-130697)
[»] scaffold0319 (1 HSPs)
scaffold0319 (195-264)||(13569-13638)
[»] scaffold0063 (2 HSPs)
scaffold0063 (9-86)||(28443-28518)
scaffold0063 (150-187)||(28342-28379)
[»] chr2 (2 HSPs)
chr2 (150-253)||(23656470-23656575)
chr2 (10-61)||(23907788-23907839)
[»] scaffold0061 (1 HSPs)
scaffold0061 (14-73)||(18097-18156)
[»] scaffold1043 (1 HSPs)
scaffold1043 (9-61)||(1432-1484)
[»] chr5 (3 HSPs)
chr5 (9-61)||(25756788-25756840)
chr5 (9-61)||(25790961-25791013)
chr5 (12-56)||(24832209-24832253)
[»] chr4 (2 HSPs)
chr4 (170-239)||(3576240-3576311)
chr4 (9-56)||(19728457-19728504)


Alignment Details
Target: scaffold0218 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 150 - 264
Target Start/End: Original strand, 14378 - 14493
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  14378 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattc 14477  T
Q  249 ctcattattcatctct 264  Q
    ||||||||||||||||    
T  14478 ctcattattcatctct 14493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 14237 - 14314
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatatttacacaccaccc 86  Q
    |||| ||||||  |||||||||||||||||||||||| ||||| ||||||||| ||| |||||||  |||||||||||    
T  14237 gacaccatcatataagtcatcatcataattatacgtcatcattgtcatagtcaatatatatatatacacacaccaccc 14314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 150 - 264
Target Start/End: Original strand, 29058 - 29173
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  29058 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattc 29157  T
Q  249 ctcattattcatctct 264  Q
    ||||||||||||||||    
T  29158 ctcattattcatctct 29173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 28917 - 28994
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatatttacacaccaccc 86  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  28917 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatatttacacaccaccc 28994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 24720 - 24782
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatat 71  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  24720 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 24782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 152 - 264
Target Start/End: Original strand, 16642300 - 16642413
Alignment:
Q  152 atcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcct 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  16642300 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattcct 16642399  T
Q  251 cattattcatctct 264  Q
    ||||||||||||||    
T  16642400 cattattcatctct 16642413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 4712913 - 4712799
Alignment:
Q  151 catcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcc 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  4712913 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattcc 4712814  T
Q  250 tcattattcatctct 264  Q
    |||||||||||||||    
T  4712813 tcattattcatctct 4712799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 150 - 264
Target Start/End: Complemental strand, 14062892 - 14062777
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattc 248  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| | ||    
T  14062892 tcatcataactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatggaatc 14062793  T
Q  249 ctcattattcatctct 264  Q
    ||||||||||||||||    
T  14062792 ctcattattcatctct 14062777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 150 - 264
Target Start/End: Complemental strand, 14055151 - 14055036
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattc 248  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||| ||||||  | ||    
T  14055151 tcattatcactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcgcattatagaatc 14055052  T
Q  249 ctcattattcatctct 264  Q
    ||||||||||||||||    
T  14055051 ctcattattcatctct 14055036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 253
Target Start/End: Complemental strand, 13926960 - 13926858
Alignment:
Q  153 tcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatc-ttcgtcatcactcttcgtcacattatgtattcct 250  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| ||| || |||||||||||  | ||||||||||||| |||||||||| ||||||    
T  13926960 tcatcactaaaatataaacattatcatttctcatcgtatttatttatttaaatatatataatatcaattgtcatcactcttcatcacattatggattcct 13926861  T
Q  251 cat 253  Q
    |||    
T  13926860 cat 13926858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 16642133 - 16642197
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 73  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  16642133 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatat 16642197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 4713059 - 4712995
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 73  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  4713059 gacaccatcattcaagttatcatcataattatacgtcgtcattctcatagtcaatatatatatat 4712995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 14063045 - 14062981
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 73  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||||||    
T  14063045 gacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatatat 14062981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 14055284 - 14055221
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatata 72  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||| |||| ||| ||||||    
T  14055284 gacatcatcattcaagtcatcatcataattatacgtcatcattatcatcgtcaatatatatata 14055221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 150 - 264
Target Start/End: Complemental strand, 14989489 - 14989374
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  14989489 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattc 14989390  T
Q  249 ctcattattcatctct 264  Q
     |||||||||||||||    
T  14989389 gtcattattcatctct 14989374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 14980376 - 14980262
Alignment:
Q  151 catcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcc 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  14980376 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattcc 14980277  T
Q  250 tcattattcatctct 264  Q
    |||||||||||||||    
T  14980276 tcattattcatctct 14980262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 14980522 - 14980458
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 73  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  14980522 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatat 14980458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 10906938 - 10906902
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcat 186  Q
    ||||||||||||| |||||||||||||||||||||||    
T  10906938 tcatcatcactaaaatataaacattatcatttctcat 10906902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 150 - 264
Target Start/End: Complemental strand, 51658776 - 51658661
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattc 248  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  51658776 tcatcatcactaacatataaatattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattc 51658677  T
Q  249 ctcattattcatctct 264  Q
    ||||||||||||||||    
T  51658676 ctcattattcatctct 51658661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 13882350 - 13882243
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| ||||    
T  13882350 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacaatatggattc 13882251  T
Q  249 ctcattat 256  Q
    ||||||||    
T  13882250 ctcattat 13882243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 13882526 - 13882462
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 73  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| |||  ||| |||||||    
T  13882526 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcattgtctatatatatatat 13882462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 51658912 - 51658854
Alignment:
Q  12 atcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtata 70  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| |||| ||| ||||    
T  51658912 atcatcgttcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatata 51658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 1567166 - 1567069
Alignment:
Q  164 atataaacattatcatttctcatcgtattta-ttaattacatgtatataatatc-ttcgtcatcactcttcgtcac-attatgt-attcctcattatt 257  Q
    ||||||| ||| ||||||||||||||||||| ||  |||||| |||||||||||  |||||||||||||| ||||| ||||| | |||||||||||||    
T  1567166 atataaatattgtcatttctcatcgtatttatttgtttacatatatataatatcaatcgtcatcactctttgtcacaattatatgattcctcattatt 1567069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 150 - 264
Target Start/End: Original strand, 48376788 - 48376903
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattc 248  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||  ||||    
T  48376788 tcatcatcaataacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatagattc 48376887  T
Q  249 ctcattattcatctct 264  Q
    ||||||||||||||||    
T  48376888 ctcattattcatctct 48376903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 150 - 264
Target Start/End: Original strand, 16060513 - 16060628
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattc 248  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| || |||||||||  ||||    
T  16060513 tcatcatcactaacatataaacattatcatttctcatcatatttatttaattacatatatataatatcttcgtcatcactcctcatcacattatagattc 16060612  T
Q  249 ctcattattcatctct 264  Q
    ||||||||||||||||    
T  16060613 ctcattattcatctct 16060628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 16060374 - 16060449
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatatttacacaccaccc 86  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||  || ||||||||||||||||||||    
T  16060374 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtca--atatatatatttacacaccaccc 16060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 253
Target Start/End: Complemental strand, 4531864 - 4531759
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttattaatt-acatgtatataatatct-tcgtcatcactcttcgtcacattatgtatt 247  Q
    ||||||||| ||| |||||| |||||| ||||||||| ||||||||| ||| |||| |||||||||||  | |||||||||||||||||||||||| |||    
T  4531864 tcatcatcaataaaatataagcattattatttctcattgtatttatttatttacatatatataatatcaattgtcatcactcttcgtcacattatggatt 4531765  T
Q  248 cctcat 253  Q
    ||||||    
T  4531764 cctcat 4531759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 9080206 - 9080269
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatata 72  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||| ||||||    
T  9080206 gacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatata 9080269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 16069067 - 16069015
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 61  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||    
T  16069067 gacatcatcattcaaatcatcatcataattatacgtcatcattctcatcgtca 16069015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 48376637 - 48376689
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 61  Q
    |||| ||||||| |||||||||||||||||||||||| |||||||||||||||    
T  48376637 gacaccatcatttaagtcatcatcataattatacgtcatcattctcatagtca 48376689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 9080339 - 9080375
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcat 186  Q
    |||||||||||||||||||||||||||||||||||||    
T  9080339 tcatcatcactaacatataaacattatcatttctcat 9080375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 150 - 264
Target Start/End: Original strand, 23658527 - 23658650
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttatt-aattaca--------tgtatataatatcttcgtcatcactcttcgtcacatt 240  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||        | |||||||||||||||||||||||||||||||||||    
T  23658527 tcatcatcactaacatataaacattataatttctcatcgtatttatttaattacacacacatatatatataatatcttcgtcatcactcttcgtcacatt 23658626  T
Q  241 atgtattcctcattattcatctct 264  Q
    ||| ||||||||||||||||||||    
T  23658627 atggattcctcattattcatctct 23658650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 23657827 - 23657885
Alignment:
Q  206 tatataatatcttcgtcatcactcttcgtcacattatgtattcctcattattcatctct 264  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23657827 tatataatatcttcgtcatcactcttcgtcacattatggattcctcattattcatctct 23657885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 23657648 - 23657699
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtc 60  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  23657648 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtc 23657699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 23657752 - 23657807
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacat 204  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  23657752 tcatcatcactaacatataaacattataatttctcatcgtatttatttaattacat 23657807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 23658423 - 23658474
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtc 60  Q
    |||| |||||||||||||||||||||||||||| ||| ||||||||||||||    
T  23658423 gacaccatcattcaagtcatcatcataattataagtcgtcattctcatagtc 23658474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 17862303 - 17862251
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 61  Q
    ||||||||||||||| |||||||||||||||||| |  |||||||||| ||||    
T  17862303 gacatcatcattcaaatcatcatcataattataccttatcattctcatcgtca 17862251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 253
Target Start/End: Original strand, 29293929 - 29293964
Alignment:
Q  218 tcgtcatcactcttcgtcacattatgtattcctcat 253  Q
    |||||||||||||||||||||||||| |||||||||    
T  29293929 tcgtcatcactcttcgtcacattatggattcctcat 29293964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 1 - 94
Alignment:
Q  172 attatcatttctcatcgtatttatt-aattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcctcattattcatctct 264  Q
    ||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  1 attatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatggaatcctcattattcatctct 94  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 130796 - 130870
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtattta-ttaattacatgtatataatatcttcgtca 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  130796 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 130870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 130633 - 130697
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 73  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  130633 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatat 130697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 195 - 264
Target Start/End: Complemental strand, 13638 - 13569
Alignment:
Q  195 ttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattcctcattattcatctct 264  Q
    |||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||    
T  13638 ttaattacatatatataatatcttcgtcatcactctttgtcacatcatggattcctcattattcatctct 13569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 28518 - 28443
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatatttacacaccaccc 86  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||||||||||  || ||||||||||||||||||||    
T  28518 gacaccatcattcaattcatcatcataattatacgtcgtcattctcatagtca--atatatatatttacacaccaccc 28443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 28379 - 28342
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatc 187  Q
    |||||||||||||||||||||||| |||||||||||||    
T  28379 tcatcatcactaacatataaacatcatcatttctcatc 28342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 253
Target Start/End: Complemental strand, 23656575 - 23656470
Alignment:
Q  150 tcatcatcactaacatataaacattatcatttctcatcgtatttattaa-ttacatgtatataatatct-tcgtcatcactcttcgtcacattatgtatt 247  Q
    |||| |||| ||| ||||||| ||||||||||||||| ||||||||| | || ||| |||||||||||  |||||||||||||||||||||||||| |||    
T  23656575 tcattatcattaaaatataaatattatcatttctcattgtatttatttactttcatatatataatatcaatcgtcatcactcttcgtcacattatggatt 23656476  T
Q  248 cctcat 253  Q
    ||||||    
T  23656475 cctcat 23656470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 23907788 - 23907839
Alignment:
Q  10 acatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 61  Q
    |||||||||||||| | |||||||||| |||||||| |||||||||| ||||    
T  23907788 acatcatcattcaaattatcatcataaatatacgtcatcattctcatcgtca 23907839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 18156 - 18097
Alignment:
Q  14 catcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 73  Q
    |||||||||||||||||||||||| |||| || ||||||||||||||| ||| |||||||    
T  18156 catcattcaagtcatcatcataatcatacttcgtcattctcatagtcaatatatatatat 18097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 1484 - 1432
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 61  Q
    ||||||||||||||| ||||||||||||||||||||  |||||||||| ||||    
T  1484 gacatcatcattcaaatcatcatcataattatacgttatcattctcatcgtca 1432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 25756840 - 25756788
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 61  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||| ||||    
T  25756840 gacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtca 25756788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 25790961 - 25791013
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcatagtca 61  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||| ||||    
T  25790961 gacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtca 25791013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 24832253 - 24832209
Alignment:
Q  12 atcatcattcaagtcatcatcataattatacgtcttcattctcat 56  Q
    |||||||||||| |||||||||||||||||| || ||||||||||    
T  24832253 atcatcattcaaatcatcatcataattatacatcatcattctcat 24832209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 3576311 - 3576240
Alignment:
Q  170 acattatcatttctcatcgtatttattaat-tacatgtatataatatct-tcgtcatcactcttcgtcacat 239  Q
    |||| ||||| |||||||||||||||| || ||||| ||||||| |||  ||||||||||||||||||||||    
T  3576311 acatcatcatctctcatcgtatttatttatatacatttatataaaatcaatcgtcatcactcttcgtcacat 3576240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 19728504 - 19728457
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcttcattctcat 56  Q
    ||||||||||||||| |||||||||||||||||| |  ||||||||||    
T  19728504 gacatcatcattcaaatcatcatcataattatactttatcattctcat 19728457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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