View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_high_12 (Length: 482)
Name: NF5999_high_12
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 33715508 - 33715660
Alignment:
| Q |
56 |
ccacagacaacatcattcatcaccgtagctact-cttacaccacaccgttgtagtggcagttctccaccgtaacggtttccctcaaatttattcacttca |
154 |
Q |
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| T |
33715508 |
ccacagacaacatcattcatcaccgtagctactacatacaccacaccgttgtagtggcagttctccaccgtaacggtttccctcaaatttattcacttca |
33715607 |
T |
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| Q |
155 |
caatcctattatcgtgcacgtcaaatctataacacaatgcaacattacattac |
207 |
Q |
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| T |
33715608 |
caatcctattatcgtgcacgtcaaatctataacacaatgcaacattacattac |
33715660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 33715451 - 33715490
Alignment:
| Q |
18 |
atgtcgtcattgacttcttaaacgtgtgcagtaagtgacc |
57 |
Q |
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| T |
33715451 |
atgtcgtcattgacttcttaaacgtgtgcagtaagtgacc |
33715490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 17101715 - 17101654
Alignment:
| Q |
294 |
cttttcgtatggttctt-aaccatatgaaaaacacctaaaaaattatacttaagttttctcc |
354 |
Q |
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| T |
17101715 |
cttttcgtatggttctagaaccatacgaaaagcacctaagaaattgtacctaagttttctcc |
17101654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 17101684 - 17101745
Alignment:
| Q |
294 |
cttttcgtatggttctt-aaccatatgaaaaacacctaaaaaattatacttaagttttctcc |
354 |
Q |
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| T |
17101684 |
cttttcgtatggttctagaaccatacgaaaagcacctaagaaattgtacctaagttttctcc |
17101745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 36822888 - 36822932
Alignment:
| Q |
311 |
aaccatatgaaaaacacctaaaaaattatacttaagttttctccc |
355 |
Q |
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||||||| ||||| ||||||||||||| ||| ||||||||||||| |
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| T |
36822888 |
aaccatacgaaaagcacctaaaaaattgtacctaagttttctccc |
36822932 |
T |
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