View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5999_high_20 (Length: 402)

Name: NF5999_high_20
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5999_high_20
NF5999_high_20
[»] chr6 (9 HSPs)
chr6 (16-225)||(9998906-9999115)
chr6 (16-176)||(10004671-10004831)
chr6 (16-176)||(9991820-9991980)
chr6 (16-176)||(10013209-10013369)
chr6 (301-384)||(9998821-9998904)
chr6 (299-384)||(10013060-10013145)
chr6 (306-384)||(9991666-9991744)
chr6 (311-384)||(10004517-10004590)
chr6 (202-260)||(33433750-33433808)
[»] chr7 (3 HSPs)
chr7 (16-85)||(33354094-33354163)
chr7 (209-266)||(10386942-10386999)
chr7 (21-85)||(33347059-33347123)
[»] chr2 (1 HSPs)
chr2 (209-249)||(36501906-36501946)


Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 9999115 - 9998906
Alignment:
Q  16 cacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagcctttttaggaagaggaagtatcggcttatcaacattttcaccatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9999115 cacattgatatcctagattatcagcatgacttccagcaacaagtattttggaagcctttttaggaagaggaagtatcggcttatcaacattttcaccatt 9999016  T
Q  116 ctttaatagtaccaatgatttcctcaccgcttccctagccaattccctatgctcctgtcaacaccaaacattttgaacgatcttacgattactattgatt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9999015 ctttaatagtaccaatgatttcctcaccgcttccctagccaattccctatgctcctgtcaacaccaaacattttaaacgatcttacgattactattgatt 9998916  T
Q  216 gacagtgtaa 225  Q
    ||||||||||    
T  9998915 gacagtgtaa 9998906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 10004831 - 10004671
Alignment:
Q  16 cacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagcctttttaggaagaggaagtatcggcttatcaacattttcaccatt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10004831 cacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagactttttaggaagaggaagtatcggcttatcaacattttcaccatt 10004732  T
Q  116 ctttaatagtaccaatgatttcctcaccgcttccctagccaattccctatgctcctgtcaa 176  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10004731 ctttaatagtaccaatgattttctcaccgcttccctagccaattccctatgctcctgtcaa 10004671  T

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Target: chr6; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 9991980 - 9991820
Alignment:
Q  16 cacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagcctttttaggaagaggaagtatcggcttatcaacattttcaccatt 115  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||    
T  9991980 cacattgatatcctagattatcagcatgacttccagcaacgagtatttttggagcctttttaggaagaggaagaagcggcttatcagcattttcaccatt 9991881  T
Q  116 ctttaatagtaccaatgatttcctcaccgcttccctagccaattccctatgctcctgtcaa 176  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9991880 ctttaatagtaccaatgatttcctcacagcttccctagccaattccctatgctcctgtcaa 9991820  T

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Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 10013369 - 10013209
Alignment:
Q  16 cacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagcctttttaggaagaggaagtatcggcttatcaacattttcaccatt 115  Q
    ||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  | ||| ||| ||    
T  10013369 cacattgatttcctatattatcagcatggcttccagcaacaagtatttttggagcctttttaggaagaggaagtatcggcttatcagaacttttaccgtt 10013270  T
Q  116 ctttaatagtaccaatgatttcctcaccgcttccctagccaattccctatgctcctgtcaa 176  Q
    ||| |||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||    
T  10013269 cttcaatagtaccaatgatttcctaacagcttctctagccaattctctatgctcctgtcaa 10013209  T

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Target: chr6; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 301 - 384
Target Start/End: Complemental strand, 9998904 - 9998821
Alignment:
Q  301 ctctgagctgatcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataaca 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9998904 ctctgagctgatcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataaca 9998821  T

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Target: chr6; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 299 - 384
Target Start/End: Complemental strand, 10013145 - 10013060
Alignment:
Q  299 aactctgagctgatcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataaca 384  Q
    ||||||||| ||||||||||||| |||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10013145 aactctgagttgatcgactaaccgggctcccgatttgatcggcaaggctgtaatcagctaatggattttcaaataggcccataaca 10013060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 306 - 384
Target Start/End: Complemental strand, 9991744 - 9991666
Alignment:
Q  306 agctgatcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataaca 384  Q
    |||| |||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||    
T  9991744 agctcatcgactaacctggctcccgagttgatcggtaaggctgtaatctgccaatggattttcaaatagtcccataaca 9991666  T

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Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 311 - 384
Target Start/End: Complemental strand, 10004590 - 10004517
Alignment:
Q  311 atcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataaca 384  Q
    ||||||||||| |||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10004590 atcgactaaccgggctaccgatttgatcggcaaggctgtaatcagccaatggattttcaaataggcccataaca 10004517  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 33433808 - 33433750
Alignment:
Q  202 gattactattgattgacagtgtaaaaatctttacacttacagtgtatacaaataaaatc 260  Q
    |||||| ||||||||| |||||||||||||||||| | | |||||||| |||| |||||    
T  33433808 gattacgattgattgagagtgtaaaaatctttacattgagagtgtataaaaatgaaatc 33433750  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 33354094 - 33354163
Alignment:
Q  16 cacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagcctttttaggaagagg 85  Q
    |||| ||||||||||||||||  ||||| ||||| || ||||||||||||| | ||||||||||||||||    
T  33354094 cacactgatatcctagattatttgcatggcttccggccacaagtatttttggaacctttttaggaagagg 33354163  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 10386999 - 10386942
Alignment:
Q  209 attgattgacagtgtaaaaatctttacacttacagtgtatacaaataaaatccaaatt 266  Q
    ||||||||||| ||||||| |||||||||| | ||| |||| |||| |||||||||||    
T  10386999 attgattgacattgtaaaattctttacactaaaagtatatataaatcaaatccaaatt 10386942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 33347059 - 33347123
Alignment:
Q  21 tgatatcctagattatcagcatgacttccagcaacaagtatttttgaagcctttttaggaagagg 85  Q
    |||| |||||||||||  ||||| ||||| || |||||||| |||| | ||||||||||||||||    
T  33347059 tgatgtcctagattatttgcatggcttccggccacaagtatctttggaacctttttaggaagagg 33347123  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 36501946 - 36501906
Alignment:
Q  209 attgattgacagtgtaaaaatctttacacttacagtgtata 249  Q
    |||| |||||||||||||||| |||||||| ||||||||||    
T  36501946 attggttgacagtgtaaaaatatttacactgacagtgtata 36501906  T

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