View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_high_32 (Length: 327)
Name: NF5999_high_32
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 312
Target Start/End: Original strand, 37137459 - 37137763
Alignment:
| Q |
9 |
ctttcaagaatcaaaacccaaacttaccatatatggaacgaccatcccttcaaaa-aatatatggagggaccatagacatattttaaccccttcaaaacg |
107 |
Q |
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| T |
37137459 |
ctttcaagaatcaaaacccaaacttaccatatatggaacgaccatcccttcaaaaaaatatatggagggaccatagacatattttaaccccttcaaaacg |
37137558 |
T |
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| Q |
108 |
ccagctccatttgccacgctttacttgtggccgaacccagccacaaagctgacatgtatgtatgaatgaggattttattcaccggcggtgaaggaagttg |
207 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37137559 |
ccagctccatttaccacgctttacttgtggccgaacccagccacaaagctgacatgtatgtatgaatgaggattttattcaccggcggtgaaggaagttg |
37137658 |
T |
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| Q |
208 |
aatccatgttctgaactctgcatctaactaaaatgttcctccgcgtacgtaaatctactaaccaattttcttacttctttctcctttcttcaattcaatc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37137659 |
aatccatgttctgaactctgcatctaactaaaatgttcctccgcgtacgtaaatctactaaccaattttcttacttctttctcctttcttcaattcaatc |
37137758 |
T |
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| Q |
308 |
ctaat |
312 |
Q |
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||||| |
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| T |
37137759 |
ctaat |
37137763 |
T |
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