View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5999_high_33 (Length: 322)

Name: NF5999_high_33
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5999_high_33
NF5999_high_33
[»] chr7 (1 HSPs)
chr7 (18-310)||(44650291-44650582)


Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 44650582 - 44650291
Alignment:
Q  18 caccacaaaattcatattttccaccaggaacaccatttccatattatgtacctccagattattataacaagaatagcggtgaaacgttggttccatttca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44650582 caccacaaaattcatattttccaccaggaacaccatttccatattatgtacctccagattattataacaagaatagcggtgaaacgttggttccatttca 44650483  T
Q  118 accaatattcttctcgaacccgaattctcactttgtgtactccataattcaatgtttgattaatttgctctttctctgccttccatattgtataatttat 217  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44650482 agcaatattcttctcgaacccgaattctcactttgtgtactccataattcaatgtttgattaatttgctctttctctgccttccata-tgtataatttat 44650384  T
Q  218 aggtgaattgttgttatggtaattcacgtccttaatttgtgcttccatattgtatacttttaagttaactttggtaattcattcatggtcctt 310  Q
    |||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44650383 aggtaaattattgttatggtagttcacgtccttaatttgtgcttccatattgtatacttttaagttaactttggtaattcattcatggtcctt 44650291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University