View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_high_46 (Length: 286)
Name: NF5999_high_46
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 270
Target Start/End: Original strand, 38448758 - 38449021
Alignment:
| Q |
10 |
ttggaactcattattattgattcctaatcatcctttatttccatgtcatcaaaatggtttctattagcgtacattccaaagtcatttcgaagcttctgat |
109 |
Q |
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| T |
38448758 |
ttggaactcattattattgattcctaatcatcctttatttccatgtcatcaaaatggtttctattagcgtaaattccaaagtcatttccaagcttctgat |
38448857 |
T |
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| Q |
110 |
ttaagaatgttactat---tggagaaattgttacgttcagcatatgtttcagaacttctctcaaaacaatgagagattcttctctgaagttagggacagt |
206 |
Q |
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| T |
38448858 |
ttaagaatgttactatatttggagaaattgttacgttcagcatatgtttcagaacttctctcaaaacaatgagagattcttctctgaagttagggacagt |
38448957 |
T |
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| Q |
207 |
atctgctactaaaaggttgaacttgataggacctttggtgcagcattgttgcaatatcaagttg |
270 |
Q |
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| T |
38448958 |
atctgctactaaaaggttgaacttgataggacctttggtgcagcattgttgcaatatcaagttg |
38449021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 38440567 - 38440633
Alignment:
| Q |
205 |
gtatctgctactaaaaggttgaacttgatagga-cctttggtgcagcattgttgcaatatcaagttg |
270 |
Q |
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| T |
38440567 |
gtatctgctgctacaaggttgaacttgataggaccccttggtgcagcattgttgcaacatcaagttg |
38440633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 38440418 - 38440467
Alignment:
| Q |
161 |
cttctctcaaaacaatgagagattcttctctgaagttagggacagtatct |
210 |
Q |
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| T |
38440418 |
cttctctcaaaacaatgagagattcttctatgaagttagggactgtatct |
38440467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 38448087 - 38448130
Alignment:
| Q |
79 |
tacattccaaagtcatttcgaagcttctgatttaagaatgttac |
122 |
Q |
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| T |
38448087 |
tacattctaaagtcatttcaaagcttctgttttaagaatgttac |
38448130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 38550182 - 38550139
Alignment:
| Q |
79 |
tacattccaaagtcatttcgaagcttctgatttaagaatgttac |
122 |
Q |
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| T |
38550182 |
tacattctaaagtcatttcaaagcttctgttttaagaatgttac |
38550139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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