View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5999_high_48 (Length: 282)

Name: NF5999_high_48
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5999_high_48
NF5999_high_48
[»] chr7 (15 HSPs)
chr7 (16-205)||(39339462-39339651)
chr7 (16-205)||(39354303-39354492)
chr7 (19-191)||(39366920-39367092)
chr7 (16-180)||(39537220-39537384)
chr7 (16-123)||(39546680-39546787)
chr7 (16-122)||(1084047-1084153)
chr7 (16-129)||(39563336-39563449)
chr7 (16-126)||(39588423-39588533)
chr7 (233-273)||(39339398-39339438)
chr7 (233-273)||(39354243-39354283)
chr7 (233-273)||(39366824-39366864)
chr7 (233-273)||(39563536-39563576)
chr7 (16-121)||(39573945-39574050)
chr7 (233-273)||(39537431-39537471)
chr7 (233-273)||(39546893-39546933)
[»] chr2 (3 HSPs)
chr2 (52-97)||(44210196-44210241)
chr2 (52-97)||(44233217-44233262)
chr2 (52-106)||(44222397-44222451)
[»] chr1 (1 HSPs)
chr1 (57-100)||(2159901-2159944)
[»] chr4 (2 HSPs)
chr4 (57-111)||(2887866-2887920)
chr4 (47-111)||(2896424-2896488)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 39339651 - 39339462
Alignment:
Q  16 caaaatcaatccccaattccacttctttagatgaatttgtgacttccaacatccatgttgctggattataaccgtctttgatcttgctaacaccttggat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39339651 caaaatcaatccccaattccacttctttagatgaatttgtgacttccaacatccatgttgctggattataaccgtctttgatcttgctaacaccttggat 39339552  T
Q  116 tcccttcatgacaagtgcttacagtttgaaatgttaagaagaagataatagtttgaagcataaaatcgaaatcaatttgatacttttcat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39339551 tcccttcatgacaagtgcttacagtttgaaatgttaagaagaagataatagtttgaagcataaaatcgaaatcaatttcatacttttcat 39339462  T

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Target: chr7; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 39354492 - 39354303
Alignment:
Q  16 caaaatcaatccccaattccacttctttagatgaatttgtgacttccaacatccatgttgctggattataaccgtctttgatcttgctaacaccttggat 115  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39354492 caaaatcaatccccaattccctttctttagatgaagttgtgacttccaacatccatgttgctggattataaccgtctttgatctttctaacaccttggat 39354393  T
Q  116 tcccttcatgacaagtgcttacagtttgaaatgttaagaagaagataatagtttgaagcataaaatcgaaatcaatttgatacttttcat 205  Q
    |||||||| ||||||||  |||| ||||||||||||| |||||||||||| ||||||||||||||| ||||||||||  |||||| ||||    
T  39354392 tcccttcaagacaagtgtgtacattttgaaatgttaacaagaagataataatttgaagcataaaattgaaatcaattccatacttatcat 39354303  T

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Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 39367092 - 39366920
Alignment:
Q  19 aatcaatccccaattccacttctttagatgaatttgtgacttccaacatccatgttgctggattataaccgtctttgatcttgctaacaccttggattcc 118  Q
    |||||||||  || ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||    
T  39367092 aatcaatccgtaactccacttctttggatgaagttgtgacttccaacatccatgttgctggattataaccgtctttaatcttgctaacaccttgtactcc 39366993  T
Q  119 cttcatgacaagtgcttacagtttgaaatgttaagaagaagataatagtttgaagcataaaatcgaaatcaat 191  Q
    ||||| ||||||||  |||| | ||||| ||||| ||| |||||||| |||||| |||||||  |||||||||    
T  39366992 cttcaagacaagtgtgtacactatgaaacgttaacaagtagataataatttgaaacataaaaatgaaatcaat 39366920  T

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Target: chr7; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 39537220 - 39537384
Alignment:
Q  16 caaaatcaatccccaattccacttctttagatgaatttgtgacttccaacatccatgttgctggattataaccgtctttgatcttgctaacaccttggat 115  Q
    ||||||||||||||||||||  ||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||  ||    
T  39537220 caaaatcaatccccaattccctttctttagatgaagtggtgacttccaacatccatgttgctggattataaccgtatttaatcttgctaacaccttttat 39537319  T
Q  116 tcccttcatgacaagtgcttacagtttgaaatgttaagaagaagataatagtttgaagcataaaa 180  Q
    |||||||| |||||||   |||| |||| |||||| | |||| ||||||| ||| ||||||||||    
T  39537320 tcccttcaagacaagtatgtacattttgtaatgttcacaagatgataataatttaaagcataaaa 39537384  T

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Target: chr7; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 39546680 - 39546787
Alignment:
Q  16 caaaatcaatccccaattccacttctttagatgaatttgtgacttccaacatccatgttgctggattataaccgtctttgatcttgctaacaccttggat 115  Q
    |||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  39546680 caaaatcaatccccaaatctacttctttagatgaatttgtgatttccaacatccatgttgctggattataaccctctttgatcttgttaacaccatggat 39546779  T
Q  116 tcccttca 123  Q
    ||||||||    
T  39546780 tcccttca 39546787  T

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Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 1084047 - 1084153
Alignment:
Q  16 caaaatcaatccccaattccacttctttagatgaatttgtgacttccaacatccatgttgctggattataaccgtctttgatcttgctaacaccttggat 115  Q
    ||||||||||||| ||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  1084047 caaaatcaatccctaattccacttccttagatgaagctgtgacttccaacatccatgttgctggattataaccgtctttaatcttggtaacaccttggat 1084146  T
Q  116 tcccttc 122  Q
    |||||||    
T  1084147 tcccttc 1084153  T

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Target: chr7; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 39563336 - 39563449
Alignment:
Q  16 caaaatcaatccccaattccacttctttagatgaatttgtgacttccaacatccatgttgctggattataaccgtctttgatcttgctaacaccttggat 115  Q
    ||||||||||||||||||||  |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  39563336 caaaatcaatccccaattccctttcttttgatgaagttgtgacttccaacatccatgttgctggattataaccgtctttaatcttgctaacaccatggat 39563435  T
Q  116 tcccttcatgacaa 129  Q
     ||||||| |||||    
T  39563436 ccccttcaagacaa 39563449  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 39588423 - 39588533
Alignment:
Q  16 caaaatcaatccccaattccacttctttagatgaatttgtgacttccaacatccatgttgctggattataaccgtctttgatcttgctaacaccttggat 115  Q
    ||||||||| ||| ||||| | ||||||||||||| | ||||||||||| ||||| |||||||||||||| || ||||| || || |  |||||||| ||    
T  39588423 caaaatcaacccctaattctaattctttagatgaagtagtgacttccaaaatccaagttgctggattatatccatctttaatgttacctacaccttgaat 39588522  T
Q  116 tcccttcatga 126  Q
    || ||||||||    
T  39588523 tctcttcatga 39588533  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 39339438 - 39339398
Alignment:
Q  233 tctacctacctcaaagtgattgattaaattggaagaattat 273  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39339438 tctacctacctcaaagtgattgattaaattggaagaattat 39339398  T

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Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 39354283 - 39354243
Alignment:
Q  233 tctacctacctcaaagtgattgattaaattggaagaattat 273  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39354283 tctacctacctcaaagtgattgattaaattggaagaattat 39354243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 39366864 - 39366824
Alignment:
Q  233 tctacctacctcaaagtgattgattaaattggaagaattat 273  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  39366864 tctacctacctcaaagtaattgattaaattggaagaattat 39366824  T

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Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 39563536 - 39563576
Alignment:
Q  233 tctacctacctcaaagtgattgattaaattggaagaattat 273  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  39563536 tctacctacctcaaagtaattgattaaattggaagaattat 39563576  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 39573945 - 39574050
Alignment:
Q  16 caaaatcaatccccaattccacttctttagatgaatttgtgacttccaacatccatgttgctggattataaccgtctttgatcttgctaacaccttggat 115  Q
    |||||| |||| ||| ||||| |||||| | |||  | || |||||||||||||| ||||||||||| || || ||||| | ||| || |||||||| ||    
T  39573945 caaaattaatctccatttccatttcttttgctgagctagtaacttccaacatccaagttgctggattgtagccatctttaagcttactgacaccttgtat 39574044  T
Q  116 tccctt 121  Q
    ||||||    
T  39574045 tccctt 39574050  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 39537431 - 39537471
Alignment:
Q  233 tctacctacctcaaagtgattgattaaattggaagaattat 273  Q
    |||||||||||||||||   |||||||||||||||||||||    
T  39537431 tctacctacctcaaagtagctgattaaattggaagaattat 39537471  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 39546893 - 39546933
Alignment:
Q  233 tctacctacctcaaagtgattgattaaattggaagaattat 273  Q
    |||||||||||||||||   |||||||||||||||||||||    
T  39546893 tctacctacctcaaagtagctgattaaattggaagaattat 39546933  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 44210196 - 44210241
Alignment:
Q  52 ttgtgacttccaacatccatgttgctggattataaccgtctttgat 97  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||    
T  44210196 ttgtaacttccaacatccatgttgctgggttatatccgtctttgat 44210241  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 44233217 - 44233262
Alignment:
Q  52 ttgtgacttccaacatccatgttgctggattataaccgtctttgat 97  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||    
T  44233217 ttgtaacttccaacatccatgttgctgggttatatccgtctttgat 44233262  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 44222397 - 44222451
Alignment:
Q  52 ttgtgacttccaacatccatgttgctggattataaccgtctttgatcttgctaac 106  Q
    |||| ||||||||||||||||||||||| ||||| || |||||||| || |||||    
T  44222397 ttgtaacttccaacatccatgttgctgggttatatccatctttgattttactaac 44222451  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 2159901 - 2159944
Alignment:
Q  57 acttccaacatccatgttgctggattataaccgtctttgatctt 100  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||    
T  2159901 acttccaacatccatgttgcaggattataaccatctttaatctt 2159944  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 2887920 - 2887866
Alignment:
Q  57 acttccaacatccatgttgctggattataaccgtctttgatcttgctaacacctt 111  Q
    |||||||||||||| |||||||||||||| || |||||||| || ||||| ||||    
T  2887920 acttccaacatccaagttgctggattatagccatctttgattttactaacccctt 2887866  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 2896424 - 2896488
Alignment:
Q  47 tgaatttgtgacttccaacatccatgttgctggattataaccgtctttgatcttgctaacacctt 111  Q
    |||| |||| |||||||||||||| |||||||||||||| || ||||| || || ||||| ||||    
T  2896424 tgaacttgtaacttccaacatccaagttgctggattatagccatctttaattttactaacccctt 2896488  T

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