View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_high_5 (Length: 584)
Name: NF5999_high_5
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 13 - 572
Target Start/End: Complemental strand, 32036592 - 32036036
Alignment:
| Q |
13 |
gaaaggcataaagggttatgagccacgttcaagctcatcttgtgcagcttgcaaattattgaaaagaagatgcacaccagattgcttatttgcaccttac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036592 |
gaaaggcataaagggttatgagccacgttcaagctcatcttgtgcagcttgcaaattattgaaaagaagatgcacaccagattgcttatttgcaccttac |
32036493 |
T |
|
| Q |
113 |
ttccattctaatgagtgcaagaaattcgccaaagttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaaacaaagag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036492 |
ttccattctaatgagtgcaagaaattcgccaaagttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaaacaaagag |
32036393 |
T |
|
| Q |
213 |
aagacacagtgaattctcttgcttatgaagctgaagcaaggcttagagacccagtttatggatgcattggttccatagctatgttgcaaaggaagatgat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036392 |
aagacacagtgaattctcttgcttatgaagctgaagcaaggcttagagacccagtttacggatgcattggttccatagctatgttgcaaaggaagatgat |
32036293 |
T |
|
| Q |
313 |
ggaacttcagcatgatttggccattgctaaggaacgtcttgctcgttgtcgcgcagttgctgcagctgctacaatcaccaccacaacagctccttctgtg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036292 |
ggaacttcagcatgatttggccattgctaaggaacgtcttgctcgttgtcgcgcagttgctgcagctgctacaatcaccaccacaacagctccttctgtg |
32036193 |
T |
|
| Q |
413 |
attgatagtttgcatcctgatgttactttgcctccatttcctgagttttccacttctaatgatctcaatgatatcttttgtcatggctcttcttcacaat |
512 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036192 |
attgatagtttgcattcggatgttactttgcctccatttcctgagttttccacttctgatgatctcaatgatatcttttgtcatggctcttcttcacaat |
32036093 |
T |
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| Q |
513 |
ttttgggtcgaaatgaaacagtggatgatttcaacaatcaaattccatatatattttgat |
572 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32036092 |
ttttgggtcgaaatgaaacagtggatgattt---caatcaaattccatatatattttgat |
32036036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 23 - 360
Target Start/End: Complemental strand, 35808949 - 35808612
Alignment:
| Q |
23 |
aagggttatgagccacgttcaagctcatcttgtgcagcttgcaaattattgaaaagaagatgcacaccagattgcttatttgcaccttacttccattcta |
122 |
Q |
| |
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||||||||||| ||| | ||||| || ||||||||||| |||||||| ||||||||||||||| |||| |||| ||||||| || ||||| | || |
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| T |
35808949 |
aagggttatgaaccaaggtcaagttcctcttgtgcagcctgcaaatttctgaaaagaagatgcataccaaattgtatatttgcgccatactttcgctccg |
35808850 |
T |
|
| Q |
123 |
atgagtgcaagaaattcgccaaagttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaaacaaagagaagacacagt |
222 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||||| ||||| || || |
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| T |
35808849 |
atgagtgcaagaaattcgcgaaagttcacaaagtatttggagcaagcaatgtgagcaagattctgattgaagttccagaggaacaaagggaagaaactgt |
35808750 |
T |
|
| Q |
223 |
gaattctcttgcttatgaagctgaagcaaggcttagagacccagtttatggatgcattggttccatagctatgttgcaaaggaagatgatggaacttcag |
322 |
Q |
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||||||| | |||||||||||||| ||||||||||||||||| || ||||||||||| ||| | ||||| | ||||||||||||||| | |||||||| |
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| T |
35808749 |
gaattctttggcttatgaagctgatgcaaggcttagagaccctgtctatggatgcataggtgctatagcacttttgcaaaggaagatggttgaacttcaa |
35808650 |
T |
|
| Q |
323 |
catgatttggccattgctaaggaacgtcttgctcgttg |
360 |
Q |
| |
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|||||| | |||||||| ||||| || || |||||||| |
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| T |
35808649 |
catgatcttgccattgcaaaggatcgcctggctcgttg |
35808612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 146 - 253
Target Start/End: Original strand, 600801 - 600908
Alignment:
| Q |
146 |
gttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaaacaaagagaagacacagtgaattctcttgcttatgaagctg |
245 |
Q |
| |
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||||||||| ||||||| ||||||||||||||||| || || | |||||| | | ||||||||||| |||||||||||||| ||||||||||||| |
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| T |
600801 |
gttcacaaaatatttggtgcaagcaatgttagcaaaattctaaatgaagtcttacctcatcaaagagaagatacagtgaattctctagcttatgaagctg |
600900 |
T |
|
| Q |
246 |
aagcaagg |
253 |
Q |
| |
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|||||||| |
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| T |
600901 |
aagcaagg |
600908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 591284 - 591351
Alignment:
| Q |
206 |
caaagagaagacacagtgaattctcttgcttatgaagctgaagcaaggcttagagacccagtttatgg |
273 |
Q |
| |
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||||||||||| || ||||||||||| ||||||||||||||||||||| ||| ||| ||||| ||||| |
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| T |
591284 |
caaagagaagatacggtgaattctctagcttatgaagctgaagcaaggattaaagatccagtgtatgg |
591351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 273
Target Start/End: Complemental strand, 12360798 - 12360671
Alignment:
| Q |
146 |
gttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaaacaaagagaagacacagtgaattctcttgcttatgaagctg |
245 |
Q |
| |
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||||||||| ||||||| ||||||||||| || || | || | |||||||| | | | ||||| ||||| ||||||| ||||||||||||||||||| |
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| T |
12360798 |
gttcacaaaatatttggtgcaagcaatgtaagtaaacttctgaatgaagtgcaaccacatcaaagggaagatgcagtgaactctcttgcttatgaagctg |
12360699 |
T |
|
| Q |
246 |
aagcaaggcttagagacccagtttatgg |
273 |
Q |
| |
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| |||||| | | ||| ||||||||||| |
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| T |
12360698 |
aggcaaggataaaagatccagtttatgg |
12360671 |
T |
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