View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_high_60 (Length: 243)
Name: NF5999_high_60
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_high_60 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 104 - 243
Target Start/End: Complemental strand, 41017243 - 41017104
Alignment:
| Q |
104 |
cttttgtcacttctgttaatcgtgttatcgtcaaggttcagactcgctaattcaatgcttcgtcacttttttcaatatctatccaatcacctttttattg |
203 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41017243 |
ctttcgtcacttctgttaatcgtgttatcgtcaaggttcagactcgctaattcaatgcttcgtcacttttttcaatatctatccaatcacctttttattg |
41017144 |
T |
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| Q |
204 |
ttgattattgcttaatcagtgttattcaagaacatggatt |
243 |
Q |
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| T |
41017143 |
ttgattattgcttaatcagtgttattcaagaacatggatt |
41017104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 41017357 - 41017270
Alignment:
| Q |
20 |
ttttcccattcgaaagtcgtcgtcagcgactcgggtctctccgtcacttgtaactcgttcatcttggactcagtcattgtgttccttt |
107 |
Q |
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| T |
41017357 |
ttttcccattcgaaagtcgccgtcagctactcgggtctctccgtcacttgtaactcgttcatcttggactcagtcattgtgttccttt |
41017270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 104 - 221
Target Start/End: Original strand, 6465300 - 6465412
Alignment:
| Q |
104 |
cttttgtcacttctgttaatcgtgttatcgtcaaggttcagactcgctaattcaatgcttcgtcacttttttcaatatctatccaatcacctttttattg |
203 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| |||||| |||||||| |
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| T |
6465300 |
ctttcgtcacttctgttaatcgtgttatcgtcaaggttcagactcgctaattcaatgcttcatca-tttttccaatatct----aatcacacttttattg |
6465394 |
T |
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| Q |
204 |
ttgattattgcttaatca |
221 |
Q |
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| T |
6465395 |
ttgattattgcttaatca |
6465412 |
T |
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