View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5999_high_61 (Length: 243)
Name: NF5999_high_61
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_high_61 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5084359 - 5084583
Alignment:
| Q |
1 |
aaaagtgtatagttatgcgtgactaagtgtcttcccaccttgttgcacaagaaaacacagtcaactaaagttgctatataatgtaaggatccaaaatgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5084359 |
aaaagtgtatagttatgcgtgactaagtgtcttcccaccttgttgcacaagaaaacacagtcaactaaagttgctatataatgtaatgatccaaaatgtt |
5084458 |
T |
|
| Q |
101 |
tccaacacacaaagtcgaacatcaataccgtatgtgcatataatttctgatatttatattgttttttcttccaacaccacacacatttgagttgtatttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5084459 |
tccaacacacaaagtcgaacatcaataccgtatgtgcatataatttctgatatttatattgttttttcttccaacaccacatacatttgagttgtatttt |
5084558 |
T |
|
| Q |
201 |
atacaatgtcagatgctgtttccat |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5084559 |
atacaatgtcagatgctgtttccat |
5084583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University