View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5999_high_62 (Length: 240)

Name: NF5999_high_62
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5999_high_62
NF5999_high_62
[»] chr7 (3 HSPs)
chr7 (1-221)||(28644026-28644246)
chr7 (130-218)||(38517689-38517777)
chr7 (2-58)||(12309288-12309343)
[»] chr6 (4 HSPs)
chr6 (120-221)||(21402687-21402788)
chr6 (129-218)||(9447641-9447730)
chr6 (17-58)||(20627180-20627221)
chr6 (2-58)||(7566035-7566091)
[»] chr3 (4 HSPs)
chr3 (120-221)||(20887035-20887136)
chr3 (3-56)||(1100859-1100912)
chr3 (3-52)||(31720638-31720687)
chr3 (2-58)||(42070053-42070109)
[»] chr5 (2 HSPs)
chr5 (1-54)||(3974019-3974072)
chr5 (1-58)||(17765126-17765183)
[»] chr1 (2 HSPs)
chr1 (1-58)||(39312666-39312723)
chr1 (1-58)||(34904245-34904302)
[»] scaffold0056 (1 HSPs)
scaffold0056 (2-58)||(69197-69253)
[»] chr2 (1 HSPs)
chr2 (95-166)||(40893244-40893315)
[»] chr4 (1 HSPs)
chr4 (4-45)||(38626775-38626816)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 28644246 - 28644026
Alignment:
Q  1 ctataaacattttacgatattaacaatcgaattattttttatatagttatcgcaatgtcgcacgggtctcttactagttctataatttataatagagtaa 100  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28644246 ctataaacattttacgatatcaacaatctaattattttttatatagttatctcaatgtcgcacgggtctcttactagttctataatttataatagagtaa 28644147  T
Q  101 acctccattttcgttccataaagtgacactcgctatcagacatgtccctaaatcaatgaaaattatcaaattctcctcaattgttaactatgttagtcat 200  Q
    |||||||||||||  ||  ||||||||||||||||||| ||| ||||   |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28644146 acctccattttcgcccctgaaagtgacactcgctatcaaacacgtcctcgaatcaatgaaaattatcaaattctcctccattgttaactatgttagtcat 28644047  T
Q  201 aatagtccaaaacgttaactg 221  Q
    |||||||||||||||||||||    
T  28644046 aatagtccaaaacgttaactg 28644026  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 38517777 - 38517689
Alignment:
Q  130 tcgctatcagacatgtccctaaatcaatgaaaattatcaaattctcctcaattgttaactatgttagtcataatagtccaaaacgttaa 218  Q
    ||||||||||||| ||||||  ||||| |||||||||||||  ||||   ||||||||||  |||||||||| ||||||||||||||||    
T  38517777 tcgctatcagacacgtccctggatcaacgaaaattatcaaaagctccctcattgttaactccgttagtcatattagtccaaaacgttaa 38517689  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 12309288 - 12309343
Alignment:
Q  2 tataaacattttacgatattaacaatcgaattattttttatatagttatcgcaatgt 58  Q
    |||||||||||| | |||||||||||| |||||||||||||||| ||||||||||||    
T  12309288 tataaacatttttcaatattaacaatctaattattttttatata-ttatcgcaatgt 12309343  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 21402788 - 21402687
Alignment:
Q  120 aaagtgacactcgctatcagacatgtccctaaatcaatgaaaattatcaaattctcctcaattgttaactatgttagtcataatagtccaaaacgttaac 219  Q
    ||||||||||||||| || |||||||||||  |||||||||||||||||||  |||||| |||||| ||| | |||||||||||||||||| ||||||||    
T  21402788 aaagtgacactcgctgtctgacatgtccctggatcaatgaaaattatcaaaagctcctccattgttgactctattagtcataatagtccaagacgttaac 21402689  T
Q  220 tg 221  Q
    ||    
T  21402688 tg 21402687  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 9447641 - 9447730
Alignment:
Q  129 ctcgctatcagacatgtccctaaatcaatgaaaattatcaaattctcctcaattgttaactatgttagtcataatagtccaaaacgttaa 218  Q
    |||| ||||||||| |||||| |||||| |||||||||||||  ||||   ||||||||||  |||||||||| ||||||| || |||||    
T  9447641 ctcgttatcagacacgtccctgaatcaacgaaaattatcaaaagctccctcattgttaacttcgttagtcatattagtccagaatgttaa 9447730  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 20627180 - 20627221
Alignment:
Q  17 atattaacaatcgaattattttttatatagttatcgcaatgt 58  Q
    |||||||||||| |||||||||||||||| ||| ||||||||    
T  20627180 atattaacaatctaattattttttatataattaccgcaatgt 20627221  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 7566091 - 7566035
Alignment:
Q  2 tataaacattttacgatattaacaatcgaattattttttatatagttatcgcaatgt 58  Q
    ||||| |||| ||| |||||||||||| ||||||||| |||| | ||||||||||||    
T  7566091 tataagcattatacaatattaacaatctaattattttatatacaattatcgcaatgt 7566035  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 20887136 - 20887035
Alignment:
Q  120 aaagtgacactcgctatcagacatgtccctaaatcaatgaaaattatcaaattctcctcaattgttaactatgttagtcataatagtccaaaacgttaac 219  Q
    ||||||||||| ||||||| ||||||||||||||||||||||| |||||||  |||||| || |||||||  ||||||||||||||| | |||| |||||    
T  20887136 aaagtgacacttgctatcatacatgtccctaaatcaatgaaaaatatcaaaagctcctccatcgttaactcggttagtcataatagttcgaaacattaac 20887037  T
Q  220 tg 221  Q
    ||    
T  20887036 tg 20887035  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 1100912 - 1100859
Alignment:
Q  3 ataaacattttacgatattaacaatcgaattattttttatatagttatcgcaat 56  Q
    ||||||||| ||| ||||||||| || |||| ||||||||||| ||||||||||    
T  1100912 ataaacattctacaatattaacagtctaatttttttttatataattatcgcaat 1100859  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 31720687 - 31720638
Alignment:
Q  3 ataaacattttacgatattaacaatcgaattattttttatatagttatcg 52  Q
    ||||||||| ||| |||||||||||| ||||||| |||||||| ||||||    
T  31720687 ataaacattctacaatattaacaatctaattattgtttatataattatcg 31720638  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 42070109 - 42070053
Alignment:
Q  2 tataaacattttacgatattaacaatcgaattattttttatatagttatcgcaatgt 58  Q
    |||||||||| ||| |||||||||||  |||||||||||||||| || ||| |||||    
T  42070109 tataaacattctacaatattaacaataaaattattttttatataattttcgtaatgt 42070053  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3974072 - 3974019
Alignment:
Q  1 ctataaacattttacgatattaacaatcgaattattttttatatagttatcgca 54  Q
    ||||||||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  3974072 ctataaacattctacgatattaacaatctaattattttttatataattatcgca 3974019  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 17765126 - 17765183
Alignment:
Q  1 ctataaacattttacgatattaacaatcgaattattttttatatagttatcgcaatgt 58  Q
    ||||||||||| ||  |||||||||||  |||||||||||||||| ||||||||||||    
T  17765126 ctataaacattctataatattaacaatttaattattttttatataattatcgcaatgt 17765183  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 39312723 - 39312666
Alignment:
Q  1 ctataaacattttacgatattaacaatcgaattattttttatatagttatcgcaatgt 58  Q
    ||||| ||||| ||| |||||||||||| |||||||||||||||| ||||||||||||    
T  39312723 ctatacacattctacaatattaacaatctaattattttttatataattatcgcaatgt 39312666  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 34904245 - 34904302
Alignment:
Q  1 ctataaacattttacgatattaacaatcgaattattttttatatagttatcgcaatgt 58  Q
    ||||||||||  ||| |||||| ||||  |||||||||||||||| ||||||||||||    
T  34904245 ctataaacatcctacaatattagcaatttaattattttttatataattatcgcaatgt 34904302  T

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Target: scaffold0056 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 69253 - 69197
Alignment:
Q  2 tataaacattttacgatattaacaatcgaattattttttatatagttatcgcaatgt 58  Q
    |||||||||||||  |||||||||||| || ||||||||||||| ||||||||||||    
T  69253 tataaacattttataatattaacaatctaactattttttatataattatcgcaatgt 69197  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 40893244 - 40893315
Alignment:
Q  95 gagtaaacctccattttcgttccataaagtgacactcgctatcagacatgtccctaaatcaatgaaaattat 166  Q
    |||||||||  ||||||||| |   |||||||||||||||||||||||  ||||| |||||| |||||||||    
T  40893244 gagtaaaccctcattttcgtccttgaaagtgacactcgctatcagacacatccctgaatcaacgaaaattat 40893315  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 38626775 - 38626816
Alignment:
Q  4 taaacattttacgatattaacaatcgaattattttttatata 45  Q
    ||||||||| || |||||||||||| ||||||||||||||||    
T  38626775 taaacatttaacaatattaacaatctaattattttttatata 38626816  T

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