View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_high_63 (Length: 240)
Name: NF5999_high_63
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_high_63 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 22324822 - 22325061
Alignment:
| Q |
1 |
atcagaaaacattttgctaattgtatccatatcaacagttctacggtaagcacgaatttctgtccgaagggtgtgcaattttttaaactccacaagtaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22324822 |
atcagaaaacattttgctaattgtatccatatcaacagttctacggtaagcacgaatttctgtccgaagggtgtgcaattttttaaactccacaagtaaa |
22324921 |
T |
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| Q |
101 |
cgagcacactgattcctcaaagtcttcaagtcatagcggtatgctatcttcatcctctcaactacattctgtgtagtgatatctcttatgagccttttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22324922 |
cgagcacactgattcctcaaagtcttcaagtcatagcggtatgttatcttcatcctctcaactacattctgtgtagtgatatctcttatgagccttttct |
22325021 |
T |
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| Q |
201 |
caatatcctttatcagatcaattacatcatatttctttgc |
240 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |
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| T |
22325022 |
caatatcctttatcaaatcaattacatcatatttctttgc |
22325061 |
T |
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