View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5999_high_65 (Length: 239)

Name: NF5999_high_65
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5999_high_65
NF5999_high_65
[»] chr3 (3 HSPs)
chr3 (4-222)||(40899546-40899764)
chr3 (1-222)||(40904112-40904333)
chr3 (4-222)||(40880612-40880830)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 40899764 - 40899546
Alignment:
Q  4 agaatacaaactttgtcaagtggtgcatcagggttgatctttgcaacacatccggcatgaaccacagtgtactcgctgaatgtagatgtaccgacgaaat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40899764 agaatacaaactttgtcaagtggtgcatcagggttgatctttgcaacacatccggcatgaaccacagtgtactcgctgaatgtagatgtaccgacgaaat 40899665  T
Q  104 ggtgaatgggctgtcccttaatagagaatcttgactggttgtcattgatcataacacccctgtcagtgttgatcctaagaagatcacacatgttgctttc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40899664 ggtgaatgggctgtcccttaatagagaatcttgactggttgtcattgatcataacacccctgtcagtgttgatcctaagaagatcacacatgttgctttc 40899565  T
Q  204 ctccgacatacaatgtgga 222  Q
    |||||||||||||||||||    
T  40899564 ctccgacatacaatgtgga 40899546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 40904333 - 40904112
Alignment:
Q  1 ctaagaatacaaactttgtcaagtggtgcatcagggttgatctttgcaacacatccggcatgaaccacagtgtactcgctgaatgtagatgtaccgacga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40904333 ctaagaatacaaactttgtcaagtggtgcatcagggttgatctttgcaacacatccggcatgaaccacagtgtactcgctgaatgtagatgtaccgacga 40904234  T
Q  101 aatggtgaatgggctgtcccttaatagagaatcttgactggttgtcattgatcataacacccctgtcagtgttgatcctaagaagatcacacatgttgct 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40904233 aatggtgaatgggctgtcccttaagagagaatcttgactggttgtcattgatcataacacccctgtcagtgttgatcctaagaagatcacacatgttgct 40904134  T
Q  201 ttcctccgacatacaatgtgga 222  Q
    |||||||||| |||||||||||    
T  40904133 ttcctccgacttacaatgtgga 40904112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 40880830 - 40880612
Alignment:
Q  4 agaatacaaactttgtcaagtggtgcatcagggttgatctttgcaacacatccggcatgaaccacagtgtactcgctgaatgtagatgtaccgacgaaat 103  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||| ||||    
T  40880830 agaatacaaactttatcaagaggtgcatcagggttgatctttgcaacacatccagcatgaaccacagtgtattcactgaatgtcgatgtaccgacaaaat 40880731  T
Q  104 ggtgaatgggctgtcccttaatagagaatcttgactggttgtcattgatcataacacccctgtcagtgttgatcctaagaagatcacacatgttgctttc 203  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40880730 ggtgaatgggctgtcccttaatagagaatcttgactgattgtcattgatcataacacccctgtcagtgttgatcctaagaagatcacacatgttgctttc 40880631  T
Q  204 ctccgacatacaatgtgga 222  Q
    ||| ||| |||||||||||    
T  40880630 ctctgacttacaatgtgga 40880612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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