View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_high_68 (Length: 231)
Name: NF5999_high_68
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_high_68 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 13806387 - 13806600
Alignment:
| Q |
1 |
tcaaacaacgcaatcagcttaaccctaaaattatttcaacaacaataacaacaaagaagttaaaattaaagggaataagttcagaaaacttacaggcttg |
100 |
Q |
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| T |
13806387 |
tcaaacaacgtaatcagcttaaccctaatattatttcaacaacaataacaacaaagaagttaaaattaaagggaataagttcagaaaacttacaagcttg |
13806486 |
T |
|
| Q |
101 |
aaggtttgaagggtttgtcgttttgaagggtttgaagagtgaataattggaattgcgattatattggttcgattgaagaagaacttgcgctggaattaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
13806487 |
aaggtttgaagggtttgtcgttttgaagggtttggagagtgaataattggaattgcgattatattagttcgattgaagaagaacttgcgctggaattgga |
13806586 |
T |
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| Q |
201 |
attgctattggacg |
214 |
Q |
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|||||||||||||| |
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| T |
13806587 |
attgctattggacg |
13806600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 27095025 - 27095253
Alignment:
| Q |
1 |
tcaaacaacgcaatcagcttaaccctaaaattatttcaacaacaataac---------------aacaaagaagttaaaattaaagggaataagttcaga |
85 |
Q |
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| T |
27095025 |
tcaaacaacgcaatcagcttaaccctaaaattatttcaacaacaataacaacaaagaagttaacaacaaagaagttaaaattaaagggaataagttcaga |
27095124 |
T |
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| Q |
86 |
aaacttacaggcttgaaggtttgaagggtttgtcgttttgaagggtttgaagagtgaataattggaattgcgattatattggttcgattgaagaagaact |
185 |
Q |
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| T |
27095125 |
aaacttacaggcttgaaggtttgaagggtttgtcgttttgaagggtttgaagagtgaataattggaattgcgattatattggttcgattgaagaataact |
27095224 |
T |
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| Q |
186 |
tgcgctggaattagaattgctattggacg |
214 |
Q |
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| T |
27095225 |
tgcgctggaattggaattgctattggacg |
27095253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27094970 - 27095024
Alignment:
| Q |
1 |
tcaaacaacgcaatcagcttaaccctaaaattatttcaacaacaataacaacaaa |
55 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27094970 |
tcaaacaacacaatcagctaaaccctaaaattatttcaacaacaataacaacaaa |
27095024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13806332 - 13806386
Alignment:
| Q |
1 |
tcaaacaacgcaatcagcttaaccctaaaattatttcaacaacaataacaacaaa |
55 |
Q |
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| T |
13806332 |
tcaaacaacacaatcagctaaaccctaaaattattccaacaacaataacaacaaa |
13806386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27094891 - 27094932
Alignment:
| Q |
1 |
tcaaacaacgcaatcagcttaaccctaaaattatttcaacaa |
42 |
Q |
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| T |
27094891 |
tcaaacaacacaatcagctaaaccctaaaattatttcaacaa |
27094932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 943894 - 943843
Alignment:
| Q |
21 |
aaccctaaaattatttcaacaacaataacaacaaagaa-gttaaaattaaag |
71 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
943894 |
aaccctaaaattatttcaacaacaataacaacaaagaaggttaaaattaaag |
943843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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