View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_high_72 (Length: 222)
Name: NF5999_high_72
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_high_72 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 41016837 - 41017040
Alignment:
| Q |
1 |
atcaaaagcaactctaaagttggaaaaaataacacaagtttcatgtcctccaattgataaaccctcaacttggtatccttcaatattcaaaccctttgat |
100 |
Q |
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| T |
41016837 |
atcaaaagcaactctaaagttggaaaaaataacacaagtttcatgtcctccaattgataaaccctcaacttggtatccttcaatattcaaaccctttgat |
41016936 |
T |
|
| Q |
101 |
ttcttctttgactctgtttctgaactcttctcagttccaagctccatcaacgcaatagaatggtactgcggcagaactgaaaaacccttattcaattaat |
200 |
Q |
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| T |
41016937 |
ttcttctttgactctgtttctgaacttttctcagttccaagctccatcaacgcaatagaatggtactgcggcagaactgaaaaacccttattcaattaat |
41017036 |
T |
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| Q |
201 |
aata |
204 |
Q |
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|||| |
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| T |
41017037 |
aata |
41017040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 41018580 - 41018763
Alignment:
| Q |
1 |
atcaaaagcaactctaaagttggaaaaaataacacaagtttcatgtcctccaattgataaaccctcaacttggtatccttcaatattcaaaccctttgat |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41018580 |
atcaaaagcaattctaaagttggaaaaaataacacaaatttcatgtcctccaattgataaactctcaacttggtatccttcaatattcaaaccctttgat |
41018679 |
T |
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| Q |
101 |
ttcttctttgactctgtttctgaac---------------tcttctcagttccaagctccatcaacgcaatagaatggtactgc |
169 |
Q |
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| T |
41018680 |
ttcttctttgactctgtttctgaacttcctgactttaacttcttctcagttccaagctccatcaacgcaatagaatggtactgc |
41018763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 12114617 - 12114785
Alignment:
| Q |
1 |
atcaaaagcaactctaaagttggaaaaaataacacaagtttcatgtcctccaattgataaaccctcaacttggtatccttcaatattcaaaccctttgat |
100 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12114617 |
atcaaaagcaactctaaagtgtgaaaaaataacacaagtttcatgtcctccaattgataaaccctcaacttggtatccttcaatattcaaaccctttgat |
12114716 |
T |
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| Q |
101 |
ttcttctttgactctgtttctgaactcttctcagttccaagctccatcaacgcaatagaatggtactgc |
169 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12114717 |
ttcttctttgactctgtttctgaacttttctcagttctaagctccatcaacgcaatagaatggtactgc |
12114785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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