View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5999_high_8 (Length: 540)

Name: NF5999_high_8
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5999_high_8
NF5999_high_8
[»] chr4 (2 HSPs)
chr4 (311-529)||(9695925-9696143)
chr4 (255-311)||(9695896-9695952)
[»] chr8 (1 HSPs)
chr8 (174-254)||(35381149-35381229)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 1e-98; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 311 - 529
Target Start/End: Original strand, 9695925 - 9696143
Alignment:
Q  311 tttccttattgtgttcatgctttttgatattgtgtgcagcgataatgcatatttatgtggtagcaataacttttgcttcatgggaaacatttcaaatgaa 410  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  9695925 tttccttatggtgttcatgctttttgatattgtgtgcaacgataatgcatatttatgtggtttcaataacttttgcttcatgggaaacatttcaaatgaa 9696024  T
Q  411 tgaacgaatttataattgaaggaaggattgttactattagagtaaaagagtgatacattagatgaaaatataagtgctgaacattgtaaatatgtttagg 510  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||    
T  9696025 tgaacgaatttataattgagggaaggattgttactattaaagtaaaagagtcatacattagatcaaaatataagtgttgaacattgtaaatatgtttagg 9696124  T
Q  511 gtagaaatatgatgttcat 529  Q
    |||||||||||||||||||    
T  9696125 gtagaaatatgatgttcat 9696143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 9695896 - 9695952
Alignment:
Q  255 taaagatataagttcctttcatcaaaagttttccttatggtgttcatgctttttgat 311  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  9695896 taaagatataagctccttgcatcaaaagttttccttatggtgttcatgctttttgat 9695952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 35381149 - 35381229
Alignment:
Q  174 gaaagatagcttcttaaaactgcggcaaaattggtcttggaatgcaatattaatacttataacgtaataccaaacaggcta 254  Q
    ||||||||||||||||||| |||| |||||||||  ||| || || ||||||||| |||||| ||||||||||||||||||    
T  35381149 gaaagatagcttcttaaaattgcgacaaaattggcattgaaacgcgatattaataattataaggtaataccaaacaggcta 35381229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University