View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_1 (Length: 770)
Name: NF5999_low_1
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 638; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 13 - 725
Target Start/End: Complemental strand, 3054878 - 3054166
Alignment:
| Q |
13 |
aggcaaagtcaccagaaggggaaagcaaccatgtagagttgcttgtttcagcagtaaaagaatcaccaatggctatagtgtttttggtttgagctagaac |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3054878 |
aggcaaagtcaccagaaggggaaagcaaccatgtagagttgcttgtttcagcagtaaaagaatcaccaatggctatagtgtttttggtttgagctagaac |
3054779 |
T |
|
| Q |
113 |
atggatggattgaagaatcagtgacaagagaagaaagggaagcagtagagtggaagccatgtttagattctatctcaattttattcatatgatttttata |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3054778 |
atggatggattgaagaatcagtgacaagagaagaaagggaagcagtagagtggaagccatgtttagattctatctcaattttattcatatgatttttata |
3054679 |
T |
|
| Q |
213 |
gaaaatagcaattgtttttgtccataaaaatttcatcacttagtcattactctgctgaataatctttgtgtagacttggacctggtcaactcataagtca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3054678 |
gaaaatagcaattgtttttgtccataaaaatttcatcacttagtcattactctgctgaataatctttgtgtagacttggacctggtcaactcataagtca |
3054579 |
T |
|
| Q |
313 |
taagttggtttaaccatctggacataacagacgtatgatatacttccatttttgatnnnnnnnnnnnnnnnnncaatttacaatctcaacaaaggatttg |
412 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3054578 |
taagttggtttaaccatctggatataacagacgtatgatatacttccatttttgataaaaataaaaatgaaaataatttacaatctcaacaaaggatttg |
3054479 |
T |
|
| Q |
413 |
tgttcttttaaagtggactttgcatggttaaaaatatgaactatatttttgttcttctaaattggttttcccttttcaaaatccagtttttggatcctta |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3054478 |
tgttcttttaaagtggactttgcatggttaaaaatatgaactatatttttgttcttctaaattggttttcccttttcaaaatccagtttttggatcctta |
3054379 |
T |
|
| Q |
513 |
gctaagatatatagattcaaaagtggaattatgaaaacaaacaaaatattgatgtatcataagacctacatagtagaggttcatttgaatgattctttgt |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3054378 |
gctaagatatatagattcaaaagtggaattatgaaaacaaacaaaatattgatgtatcataagacctacatagtagaggttcatttgaatgattctttgt |
3054279 |
T |
|
| Q |
613 |
ttggtgtcaactctttgatttttatgagacgagaattttggtaatttcgattttgatcgtgagataagtatagtctcatcgaaatcatttgaccataatt |
712 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
3054278 |
ttggtgtcaactctctgattttcatgagacgagaattttggtaatttcgattttgatcgtgagataagtatagtctgatcaaaatcatttgaccataatt |
3054179 |
T |
|
| Q |
713 |
acttggttaattt |
725 |
Q |
| |
|
||||||||||||| |
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|
| T |
3054178 |
acttggttaattt |
3054166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 3034016 - 3033848
Alignment:
| Q |
13 |
aggcaaagtcaccagaaggggaaagcaaccatgtagagttgcttgtttcagcagtaaaagaatcaccaatggctatagtgtttttggtttgagctagaac |
112 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| |
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| T |
3034016 |
aggcaaagtcaccagaaggtgaaagtaaccatgtagagttgctggtttcagcagtaaaagaatcaccaatggctatagtactattggtttgagctacaac |
3033917 |
T |
|
| Q |
113 |
atggatggattgaagaatcagtgacaagagaagaaagggaagcagtagagtggaagccatgtttagatt |
181 |
Q |
| |
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| || ||||||||||||||| || | || ||||||| ||| ||||||| |||||||||||||||||| |
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| T |
3033916 |
accgacggattgaagaatcagcgagtataggagaaaggaaaggagtagagaggaagccatgtttagatt |
3033848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 3042056 - 3041887
Alignment:
| Q |
13 |
aggcaaagtcaccagaaggggaaagcaaccatgtagagttgcttgtttcagcagtaaaagaatcaccaatggctatagtgtttttggtttgagctagaac |
112 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||| ||| |
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| T |
3042056 |
aggcaaagtcaccagaaggtgaaagtaaccatgtagagttgctggtgtcagcagtaaaagaatcaccaatggctatagtactattggtttgagctacaac |
3041957 |
T |
|
| Q |
113 |
atggatggattgaagaatcagtgacaagagaag-aaagggaagcagtagagtggaagccatgtttagatt |
181 |
Q |
| |
|
| |||||||||||||||||| || | || || ||||| ||| ||||||| |||||| ||||||||||| |
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| T |
3041956 |
accgatggattgaagaatcagcgagtataggagaaaaggaaaggagtagagaggaagcgatgtttagatt |
3041887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 467 - 684
Target Start/End: Complemental strand, 3039983 - 3039772
Alignment:
| Q |
467 |
ttctaaattggttttcccttttcaaaatccagtttttggatccttagctaagatatatagattcaaaagtggaattatgaaaacaaacaaaatattgatg |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||| || |||||||||||| |||||||||||| |
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|
| T |
3039983 |
ttctaaattggttttcccttttcaaaatccagttttttgatacttagctaagttatatagattcaaaaggggttatatgaaaacaaa-aaaatattgatg |
3039885 |
T |
|
| Q |
567 |
tatcataagacctacatagtagaggttcatttgaatgattctttgtttggtgtcaactctttgatttttatgagacgagaattttggtaatttcgatttt |
666 |
Q |
| |
|
|||||||| ||||| | |||| ||||| |||||||||| || |||||| | ||| || | |||||||||| ||| |||||||| |||||| |
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| T |
3039884 |
tatcataaaacctagctgatagaaattcatctgaatgattccttttttggtattaac-----agttctcatgagacgaggattctggtaattcagatttt |
3039790 |
T |
|
| Q |
667 |
gatcgtgagataagtata |
684 |
Q |
| |
|
|||||||||||||||||| |
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| T |
3039789 |
gatcgtgagataagtata |
3039772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 3064422 - 3064545
Alignment:
| Q |
13 |
aggcaaagtcaccagaaggggaaagcaaccatgtagagttgcttgtttcagcagtaaaagaatcaccaatggctatagtgtttttggtttgagctagaac |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||| | || |||| ||||||||||||||||||||| |||| || ||||||||||||||| ||| |
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|
| T |
3064422 |
aggcaaagtcaccagaaggtgaaagcaaccatggagaggtactggtttgtgcagtaaaagaatcaccaatgactatggtacttttggtttgagctacaac |
3064521 |
T |
|
| Q |
113 |
atggatggattgaagaatcagtga |
136 |
Q |
| |
|
| ||||||||| ||||||||||| |
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|
| T |
3064522 |
acagatggattgcagaatcagtga |
3064545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 3072117 - 3072265
Alignment:
| Q |
13 |
aggcaaagtcaccagaaggggaaagcaaccatgtagagttgcttgtttcagcagtaaaagaatcaccaatggctatagtgtttttggtttgagctagaac |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||| || | ||||| | | || | |||||||| ||||| || ||||||||||||||| ||| |
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|
| T |
3072117 |
aggcaaagtcaccagaaggtgaaagcaaccatggagaggtgttggtttctgaaatatgaaaatcaccagctgctatggtacttttggtttgagctacaac |
3072216 |
T |
|
| Q |
113 |
atggatggattgaagaatcagtgacaagagaagaaagggaagcagtaga |
161 |
Q |
| |
|
| ||||||||||||||||||||| ||||||| ||||||||| |||||| |
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|
| T |
3072217 |
actgatggattgaagaatcagtgagaagagaaaaaagggaagaagtaga |
3072265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 3066463 - 3066554
Alignment:
| Q |
17 |
aaagtcaccagaaggggaaagcaaccatgtagagttgcttgtttcagcagtaaaagaatcaccaatggctatagtgtttttggtttgagcta |
108 |
Q |
| |
|
||||||||||||||| |||| |||||||| |||| || | |||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3066463 |
aaagtcaccagaaggtgaaaacaaccatgaagaggtgttggtttgtgcagtaaaagaatcaccaatggctatagtacttttggtttgagcta |
3066554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 3068446 - 3068516
Alignment:
| Q |
13 |
aggcaaagtcaccagaaggggaaagcaaccatgtagagttgcttgtttcagcagtaaaagaatcaccaatg |
83 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||| || || ||||||||||||||||||||| |
|
|
| T |
3068446 |
aggcaaagtcaccagaaggtgaaagcaaccatggagagttgccggtatctgcagtaaaagaatcaccaatg |
3068516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 710 - 752
Target Start/End: Complemental strand, 3054022 - 3053980
Alignment:
| Q |
710 |
attacttggttaatttatctaaatgattttacaaaagtaacgt |
752 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3054022 |
attacttggttaatttatctaaatgattttacaaaagtaacgt |
3053980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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