View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_10 (Length: 526)
Name: NF5999_low_10
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 20 - 512
Target Start/End: Complemental strand, 3175898 - 3175407
Alignment:
| Q |
20 |
tataccatggttgattatgttttctaagtttgagaaagcttacagtgagagacaagattccagtgacaagtccagttttgatagcaagagccaaatgtgg |
119 |
Q |
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| T |
3175898 |
tataccatggttgattatgttt-ctaagtttgagaaagcttacagtgagagacaagattccagtgacaagtccagttttgatagcaagagccaaatgtgg |
3175800 |
T |
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| Q |
120 |
accactgaagtataacatgtttgatgatggtggattaagtccctttggcaattcaccaatcttccaaagaaaacaaagcaaaaaagagagttattaataa |
219 |
Q |
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| T |
3175799 |
accactgaagtataacatgtttgatgatggtggattaagtccctttggcaattcaccaatcttccaaagaaaacaaagtaaaaaagagagttattaataa |
3175700 |
T |
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| Q |
220 |
gatcatttgtatttaacatctcttgtatgtttggattagctctaagtttggcaaaatcactgtgtgccaccgttattttgtcaaaaactacgctttgaag |
319 |
Q |
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| T |
3175699 |
gatcatttgtatttaacatctcttgtatgtttggattagctctaagtttggcaaaatcactgtgtgccaccgttattttgtcaaaaactacgctttgaag |
3175600 |
T |
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| Q |
320 |
cttcaacagaatcacaacgtgaccgtgatctcgtcaaagtcaaacattattccaaacatgcactaaaagtaacaaaggtagagtgtcttttcttacaatt |
419 |
Q |
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| T |
3175599 |
cttcaacagaatcacaacgtgaccgtgatctcgtcaaagtcaaacattattccaaacatccactaaaagtaacaaaggtagagtgtcttttcttacaatt |
3175500 |
T |
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| Q |
420 |
gctattttattgatcttatgtctcattgaaaagactaaaatggttgatagaataactgaagtcaatggtgcagctgctgaaatccagaataat |
512 |
Q |
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| T |
3175499 |
gctattttattgatcttatgtctcattgaaaagactaaaatggttgatagaataactgaagtcaatggtgcagctgctgaaatccagaataat |
3175407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 166
Target Start/End: Original strand, 44011421 - 44011530
Alignment:
| Q |
57 |
gcttacagtgagagacaagattccagtgacaagtccagttttgatagcaagagccaaatgtggaccactgaagtataacatgtttgatgatggtggatta |
156 |
Q |
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| T |
44011421 |
gcttactgtgagagataggattcctgtgacaatgcctgttttgatagcaagagccaagtaaggaccattgaagtataacaggtttactgatggtggatta |
44011520 |
T |
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| Q |
157 |
agtccctttg |
166 |
Q |
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| T |
44011521 |
actccctttg |
44011530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 327
Target Start/End: Original strand, 30309671 - 30309731
Alignment:
| Q |
267 |
ttggcaaaatcactgtgtgccaccgttattttgtcaaaaactacgctttgaagcttcaaca |
327 |
Q |
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| T |
30309671 |
ttggcaaaatcacagtgagccactgtgatttgggcagaaactacactttgaagcttcaaca |
30309731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 327
Target Start/End: Complemental strand, 6011303 - 6011220
Alignment:
| Q |
243 |
tgtatgtttggattagctctaagtttggcaaaatcactgtgtgccaccgttattttgtcaaaaactacgctttgaagcttcaaca |
327 |
Q |
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| T |
6011303 |
tgtatgtttggattgacgataagtttggcaaaatcatggtgtcccaccctgattttgtcaaaagctacagttt-aagcttcaaca |
6011220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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