View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5999_low_11 (Length: 499)
Name: NF5999_low_11
Description: NF5999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5999_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 9 - 482
Target Start/End: Original strand, 6971272 - 6971745
Alignment:
| Q |
9 |
gagaagaatcaagggagacttgtagagagagttgtgtggaggataaatttatttactaacgccctatagatacaattatatattaatatttggtgggtga |
108 |
Q |
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| T |
6971272 |
gagaagaatcaagggagacttgtagagagagttgtgtggaggataaatttatttactaacgccctatagatacaattatatattaatatttggtgggtga |
6971371 |
T |
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| Q |
109 |
tcagtaaaaatctctataaacagtctttaaatcttgaggtcagctctaattttgacgagccctgaaaatccaactcacctaaactttatattagaatgat |
208 |
Q |
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| T |
6971372 |
ttagtaaaaacctctataaacagtctttaaatcttgaggtcagctctgattttgatgagtcctgaaaatccaactcacctaaactttatattagaatgat |
6971471 |
T |
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| Q |
209 |
gttttttatattagtgcttataaatatggccccatagagagggagagagattgtgtgcatgtattaaataatgatttcaaattatattattattaatggg |
308 |
Q |
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| T |
6971472 |
attttttatattagtgcttataaatatggccccatagagagggagagagattgtgtgcatgtattaaataatgatttcaaattatattattattaatggg |
6971571 |
T |
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| Q |
309 |
attttgcaggaaagagattcatatattggaatggaatagagccaaggatgtgcctcacagaggctgcattgatcaaggagtttctttcaaagtatagtac |
408 |
Q |
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| T |
6971572 |
attttgcaggaaagagattcatatattggaatggaatagagccaaggatgtgcctcacagaggctgcattgatcaaggagtttctttcaaagtatagtac |
6971671 |
T |
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| Q |
409 |
agtatctgggaaatcattgcagcaacaacaaggttccaagcattttattggaaaaggcttgttaatggcaaatg |
482 |
Q |
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| T |
6971672 |
agtatctgggaaatcattgcaacaacaacaaggttccaagcattttattggaaaaggcttgttaatggcaaatg |
6971745 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 482
Target Start/End: Original strand, 1266471 - 1266637
Alignment:
| Q |
316 |
aggaaagagattcatatattggaatggaatagagccaaggatgtgcctcacagaggctgcattgatcaaggagtttctttcaaagtatagtacagtatct |
415 |
Q |
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||||||||| | |||||||||||||| |||||||||| |||| | ||||| ||| |||||| || |||||||||||||| || |||||||||||| |
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| T |
1266471 |
aggaaagaggtatatatattggaatggtccagagccaaggttgtgtttgacagaaactgaattgataaaagagtttctttcaaaatacagtacagtatct |
1266570 |
T |
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| Q |
416 |
gggaaatcattgcagcaacaacaaggttccaagcattttattggaaaaggcttgttaatggcaaatg |
482 |
Q |
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| T |
1266571 |
gggaaatcatggttacaaaaacagggttcaaaacatttcattggagaaggagtattgatggcaaatg |
1266637 |
T |
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